Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60230 226 / 8e-74 ATSEN2, SEN2 splicing endonuclease 2 (.1.2) AT3G45590 225 / 1e-73 ATSEN1 splicing endonuclease 1 (.1.2) AT3G45577 81 / 3e-19 tRNA-intron endonucleases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006218 [exp] 435 / 1e-151 AT5G60230 251 / 4e-80 splicing endonuclease 2 (.1.2) Lus10019074 [exp] 193 / 1e-62 AT5G60230 133 / 1e-39 splicing endonuclease 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G131500 [exp] 267 / 2e-90 AT5G60230 290 / 2e-99 splicing endonuclease 2 (.1.2) Potri.014G083401 [exp] 150 / 2e-46 AT5G60230 141 / 4e-43 splicing endonuclease 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0476 [flax] [poplar] tRNA-IECD_N PF02778 [flax] [poplar] tRNA_int_endo_N tRNA intron endonuclease, N-terminal domain CL0236 [flax] [poplar] PDDEXK PF01974 [flax] [poplar] tRNA_int_endo tRNA intron endonuclease, catalytic C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10036866 pacid=23171197 polypeptide=Lus10036866 locus=Lus10036866.g ID=Lus10036866.BGIv1.0 annot-version=v1.0 ATGTCGCCGAGATGGAAAGGCAAAGGAGCCAAGGCGAAAGCTCTGGCAAATCCCATGTCCGAAACAGTCTTAAAGCTTCAATCTTGTCTCCTTCAATCAG ACGCTCACGGCTCACTCATAGGAACCACCGTGCTCCTACCAGTCGAACCATGCCAAGCTGAGCTTCTCACCGGGACCTGCTTTGGCCGACCCATCACTAC AGCCGACAAAGAAGATAAGCAATTGTTTCGGCTGTCTCTGGAGGAAGCATTCTATATCTGCCATTCTCTGAAATGCCTCAAAATCACCAACGGCGGTGGC ACTTGTCCGTTAACTGTTGAGGGGCTATGGCAGTACATGAAGTCCAAGGTACCGAATTTCCCTGTTTTCTACAAAGCTTATTCCCATCTCCGATCCAAGA ACTGGGTGGTTTGGCCCGGATCGCCGTACGGTGTTGATTACGTTGCTTATCGGCATCACCCTTCCCTGGTGCATTCCGAATACGCGGTGATCGTTTTGTC GGAAGGGGAAGTCAACGGGAGGCTGACTGTTTGGTCTGATCTTTACTGCACTATTAGACTGACTGGAAGTGTGGCGAAGACGCTGTTGGTAATTGACGTT GACAAAAGCGGGCATGGTGATGCTTCCCCTGCTTCTTTGGAGGGTTACTCTGTTGAAGAGCGGACGATCAAAAGATGGAGTGCTGAACGAAACAGGGAAG AGGATCAACAAATGGCTGCTGCTGCTGCTTCTGTTGCTAATGGTGCTAAGTCAAATGCAATGGAGGAACAACCATCGGCAGGCGAATCTAGACAGCCGAC GCTTAGACTCACTTGA
AA sequence Show only first row Show all	>Lus10036866 pacid=23171197 polypeptide=Lus10036866 locus=Lus10036866.g ID=Lus10036866.BGIv1.0 annot-version=v1.0 MSPRWKGKGAKAKALANPMSETVLKLQSCLLQSDAHGSLIGTTVLLPVEPCQAELLTGTCFGRPITTADKEDKQLFRLSLEEAFYICHSLKCLKITNGGG TCPLTVEGLWQYMKSKVPNFPVFYKAYSHLRSKNWVVWPGSPYGVDYVAYRHHPSLVHSEYAVIVLSEGEVNGRLTVWSDLYCTIRLTGSVAKTLLVIDV DKSGHGDASPASLEGYSVEERTIKRWSAERNREEDQQMAAAAASVANGAKSNAMEEQPSAGESRQPTLRLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60230		ATSEN2, SEN2	splicing endonuclease 2 (.1.2)		Lus10036866 [exp]	0	1
AT1G51310			transferases;tRNA (5-methylami...		Lus10039111 [exp]	29.7	0.6544
AT1G68552		CPuORF53	conserved peptide upstream ope...		Lus10034317 [exp]	35.8	0.6584
AT1G68552		CPuORF53	conserved peptide upstream ope...		Lus10041455 [exp]	42.8	0.6353
AT4G19540		INDH, INDL	IND1(iron-sulfur protein requi...		Lus10025895 [exp]	53.7	0.6348
AT4G38150			Pentatricopeptide repeat (PPR)...		Lus10013853 [exp]	56.9	0.6035
AT4G14590		EMB2739	embryo defective 2739 (.1)		Lus10015604 [exp]	57.5	0.6371
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Lus10043008 [exp]	59.4	0.5991
AT4G05440		EDA35	embryo sac development arrest ...		Lus10006898 [exp]	61.9	0.5657
AT5G50990			Tetratricopeptide repeat (TPR)...		Lus10032531 [exp]	84.5	0.5985
AT4G20310			Peptidase M50 family protein (...		Lus10038402 [exp]	112.0	0.5334

Compare expression of checked genes

Lus10036866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.