Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24430 146 / 3e-41 HXXXD-type acyl-transferase family protein (.1) AT3G30280 107 / 8e-27 HXXXD-type acyl-transferase family protein (.1) AT3G26040 106 / 3e-26 HXXXD-type acyl-transferase family protein (.1) AT5G47950 103 / 2e-25 HXXXD-type acyl-transferase family protein (.1) AT1G24420 103 / 2e-25 HXXXD-type acyl-transferase family protein (.1) AT4G15390 100 / 3e-24 HXXXD-type acyl-transferase family protein (.1) AT5G47980 92 / 5e-21 HXXXD-type acyl-transferase family protein (.1) AT5G23970 78 / 3e-16 HXXXD-type acyl-transferase family protein (.1) AT2G19070 66 / 5e-12 SHT spermidine hydroxycinnamoyl transferase (.1) AT5G41040 66 / 6e-12 HXXXD-type acyl-transferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006219 [exp] 200 / 1e-63 AT1G24430 152 / 3e-43 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 101 / 2e-24 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10017925 [exp] 99 / 2e-23 AT3G26040 264 / 1e-83 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 97 / 6e-23 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10004441 [exp] 96 / 2e-22 AT3G26040 196 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10021392 [exp] 95 / 6e-22 AT3G26040 184 / 6e-53 HXXXD-type acyl-transferase family protein (.1) Lus10037956 [exp] 94 / 1e-21 AT1G24430 220 / 5e-67 HXXXD-type acyl-transferase family protein (.1) Lus10021387 [exp] 93 / 3e-21 AT3G26040 206 / 3e-61 HXXXD-type acyl-transferase family protein (.1) Lus10036043 [exp] 92 / 4e-21 AT3G26040 205 / 4e-61 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G053800 [exp] 181 / 2e-54 AT1G24430 425 / 6e-147 HXXXD-type acyl-transferase family protein (.1) Potri.010G054002 [exp] 179 / 1e-53 AT1G24430 426 / 3e-147 HXXXD-type acyl-transferase family protein (.1) Potri.001G310000 [exp] 126 / 1e-33 AT3G26040 249 / 5e-78 HXXXD-type acyl-transferase family protein (.1) Potri.015G126600 [exp] 121 / 7e-32 AT3G26040 264 / 5e-84 HXXXD-type acyl-transferase family protein (.1) Potri.017G029300 [exp] 115 / 2e-29 AT1G24430 252 / 3e-79 HXXXD-type acyl-transferase family protein (.1) Potri.002G010700 [exp] 111 / 5e-28 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1) Potri.010G056400 [exp] 110 / 1e-27 AT3G26040 354 / 5e-119 HXXXD-type acyl-transferase family protein (.1) Potri.010G056450 [exp] 109 / 2e-27 AT3G26040 350 / 3e-117 HXXXD-type acyl-transferase family protein (.1) Potri.019G001400 [exp] 108 / 3e-27 AT3G26040 223 / 6e-68 HXXXD-type acyl-transferase family protein (.1) Potri.019G001200 [exp] 108 / 6e-27 AT3G26040 236 / 6e-73 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10036868 pacid=23171173 polypeptide=Lus10036868 locus=Lus10036868.g ID=Lus10036868.BGIv1.0 annot-version=v1.0 ATGAGCATCCTCACCGTTTGGGAGTGGTTGTACGGAGGAGGCCGGATCAACGATACCAACTCGTTCGTTACCTGCAACGACGAGGGGATCCCTTGTCTCG AAACCGAAGTGGACTCCCAAATTGCAGATGTCCTTGGAGAAACAGAACCAAATGAACTCAACAAATTGGTCCCGTTTCAACTCCACAATGCTGGAGAAGT TGCGTTGTTAGGCGTGCAATTGAATAGGTTTCGATGTGGTGGAATCGCAATTGGACTGTGCATGTCTCACAAGGTTGCAGATGCATCATCCACCATCTCG TTTGTTAAAGCTTGGGCCACCATTGCTCGTGGGGGAGCTGATGATGCGGTTCGAACTCCGGAATTCGTGTCTGGTGAGCTTTTCCCACCGAGGGGTGATA TGTCCGGATATGATACCAAGGTCGGGATCATGACTAGCAAAGTCGTTTCAAAGAGGTTTGTCTTCGAGGCTGATTCCATTGAAGCTTTGAGAGCAAGGTA TGCAAAGAGCAGAAGCTTGGACGGCAAGAAAGCACCATCACGGATTGAGACACTGTCTATCTTTATCTCGAGTCGTCTGGTGAAAGGTTTCCAAGGTAAT GAAGATGACTTTGGGTGGGGGAAGCCTTCAAGGGTTGGAACTCCATGCTTGAGTTACAAGAATGTGGTTGTTTTCATGGACACTGCTGCTACTGATGGAA TTGAGGCTCTGATACATCTTGATGAAGCTGACATGGCTGGCTTCCAACATGATGAAGTGTTGCTTCAGTATGCTAATTGA
AA sequence Show only first row Show all	>Lus10036868 pacid=23171173 polypeptide=Lus10036868 locus=Lus10036868.g ID=Lus10036868.BGIv1.0 annot-version=v1.0 MSILTVWEWLYGGGRINDTNSFVTCNDEGIPCLETEVDSQIADVLGETEPNELNKLVPFQLHNAGEVALLGVQLNRFRCGGIAIGLCMSHKVADASSTIS FVKAWATIARGGADDAVRTPEFVSGELFPPRGDMSGYDTKVGIMTSKVVSKRFVFEADSIEALRARYAKSRSLDGKKAPSRIETLSIFISSRLVKGFQGN EDDFGWGKPSRVGTPCLSYKNVVVFMDTAATDGIEALIHLDEADMAGFQHDEVLLQYAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036868 [exp]	0	1
AT1G31550			GDSL-like Lipase/Acylhydrolase...		Lus10026550 [exp]	3.0	0.9855
					Lus10006063 [exp]	3.2	0.9753
AT5G17490	GRAS	AtRGL3, RGL3	RGA-like protein 3 (.1)		Lus10002424 [exp]	4.2	0.9756
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10013925 [exp]	4.9	0.9226
					Lus10005843 [exp]	5.2	0.9756
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10030411 [exp]	5.5	0.8869
					Lus10022511 [exp]	6.0	0.9756
AT1G61330			FBD, F-box and Leucine Rich Re...		Lus10018433 [exp]	6.5	0.9114
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10024231 [exp]	6.7	0.9756
					Lus10010827 [exp]	7.3	0.9756

Compare expression of checked genes

Lus10036868 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.