Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15910 162 / 2e-44 FDM1 factor of DNA methylation 1, XH/XS domain-containing protein (.1) AT4G00380 155 / 4e-42 FDM2 factor of DNA methylation 2, XH/XS domain-containing protein (.1) AT1G80790 140 / 1e-36 FDM5 factor of DNA methylation 5, XH/XS domain-containing protein (.1) AT1G13790 132 / 9e-34 FDM4 factor of DNA methylation 4, XH/XS domain-containing protein (.1) AT3G48670 130 / 3e-33 RDM12, IDN2 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) AT3G12550 117 / 1e-28 FDM3 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2) AT4G01780 116 / 1e-28 XH/XS domain-containing protein (.1) AT3G29375 114 / 2e-28 XH domain-containing protein (.1.2) AT5G59390 112 / 6e-27 XH/XS domain-containing protein (.1) AT4G01180 107 / 3e-25 XH/XS domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006221 [exp] 610 / 0 AT1G15910 140 / 2e-36 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10037986 [exp] 169 / 6e-47 AT1G15910 645 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10009217 [exp] 167 / 4e-46 AT1G15910 639 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10040287 [exp] 145 / 5e-40 AT1G15910 164 / 4e-45 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10040288 [exp] 144 / 2e-39 AT1G15910 185 / 5e-53 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10000948 [exp] 132 / 5e-37 AT3G12550 193 / 2e-58 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2) Lus10002703 [exp] 140 / 2e-36 AT3G48670 495 / 3e-166 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10000951 [exp] 135 / 9e-35 AT3G48670 670 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10002702 [exp] 135 / 1e-34 AT3G48670 669 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G181000 [exp] 168 / 8e-47 AT1G15910 626 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Potri.010G202700 [exp] 155 / 8e-42 AT3G48670 716 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Potri.010G184800 [exp] 132 / 8e-34 AT1G13790 526 / 1e-178 factor of DNA methylation 4, XH/XS domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03469 [flax] [poplar] XH XH domain
Representative CDS sequence Show only first row Show all	>Lus10036870 pacid=23171072 polypeptide=Lus10036870 locus=Lus10036870.g ID=Lus10036870.BGIv1.0 annot-version=v1.0 ATGGCCGACTACGACGCTCTCGAGGAACTAAGGATAGCTCGGAGCCAGGGAGCGAACCTGGCAAGGGCACTTGATTCCAGGAACAAAAGGTTGATGGAAC TGGAGAAGAAGTGTGATGGCTACGAAAGTGAGTTAACAGCTCTGGCCTGGGTGAAAATGGAGCATGCTAGGCTGCTCCAAGCACAAACTGAAGGTGCCAG AGAATTTGAGTTAATCAGAGCTTTGAATGAGAGACTGGACTACAATTTGAATTATCAAAGGAATGCGATTGGGAAGCTAGAGGAGGAAGTGGCTCGCAGC AACCTGGAGAATGAGAAGCTGATATGCCATTTAGATTCTCAAAGAAACGCAATTGAGAAGGTAGAGAAGGAAGTGGCTTGCATCAACCTGGAGAATCAAA GGCTGAAATCCAATTTGGATTCTCAGAAGAATGAAATTCAGAAGCTAGAGAAGGAAGTAGATCGCACCAACCTCGAGAAGAAAAAGTTGAAGGCAGAATG TGATGAGCTGAGGGAACAACTGATGGCGAAACAATGGGCATTGAACTCTATGGAGGACTTCAATAAAGGTCTTGCCGTTTCGGACTTTGCTTCCAACACA GAGCTACAAGATGCTCGCCAAGAATTAAAGCATGGGTTGGCTGATCTTTTGGATGGTGAACGAACAATTGGGATCAGGAACATGGGGGAAATCAATCCTA AAGCCTTCAAACAAGTTTGCTCCGAGAGATTCCCCGTCGACTCGGAGGCTAAAGTGATGGAGTTGTGCTCATCATGGCAGTCAGAGCTCAGTAAGTCAAC ATGGCATCCCTTCAAGCAGGCACACGTTCATGGGAAATTGCAGGAAGTAATAGACGACAACGATCCGAAGCTGGAGAAGTTGAGGATGGAATGGGGAGAG GAGCCTTTCATGGCGGTAGGGAAAGCATTAACGGAGTTGAACGAGTACAATGCAAGTGGAAGATATGCAGTTCCTGAAATGTGGAACTTTGATGCTGGAA GGAAAGCCACATTGAAAGAGGTAATCAAGTGTGTCCTTCAACGGCTCAAGGCCTACACTTCTCCCAAGCGCAAGAGATTCCAGAGCAGGCGCCAGCTACA AGTTTAG
AA sequence Show only first row Show all	>Lus10036870 pacid=23171072 polypeptide=Lus10036870 locus=Lus10036870.g ID=Lus10036870.BGIv1.0 annot-version=v1.0 MADYDALEELRIARSQGANLARALDSRNKRLMELEKKCDGYESELTALAWVKMEHARLLQAQTEGAREFELIRALNERLDYNLNYQRNAIGKLEEEVARS NLENEKLICHLDSQRNAIEKVEKEVACINLENQRLKSNLDSQKNEIQKLEKEVDRTNLEKKKLKAECDELREQLMAKQWALNSMEDFNKGLAVSDFASNT ELQDARQELKHGLADLLDGERTIGIRNMGEINPKAFKQVCSERFPVDSEAKVMELCSSWQSELSKSTWHPFKQAHVHGKLQEVIDDNDPKLEKLRMEWGE EPFMAVGKALTELNEYNASGRYAVPEMWNFDAGRKATLKEVIKCVLQRLKAYTSPKRKRFQSRRQLQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10036870 [exp]	0	1
AT2G26990		COP12, ATCSN2, ...	FUSCA 12, CONSTITUTIVE PHOTOMO...		Lus10041295 [exp]	2.0	0.9340
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10011697 [exp]	3.0	0.8837
AT3G25940			TFIIB zinc-binding protein (.1...		Lus10015458 [exp]	3.2	0.9160
AT5G57230			Thioredoxin superfamily protei...		Lus10003582 [exp]	3.9	0.9120
AT2G05630		ATG8D	Ubiquitin-like superfamily pro...		Lus10039656 [exp]	4.5	0.8976
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10006221 [exp]	4.7	0.8683
AT1G75440		UBC16	ubiquitin-conjugating enzyme 1...		Lus10041791 [exp]	8.2	0.8616
AT5G07950			unknown protein		Lus10021622 [exp]	8.4	0.8928
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10025933 [exp]	11.4	0.8784
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10027681 [exp]	16.9	0.8732

Compare expression of checked genes

Lus10036870 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.