Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67820 348 / 3e-117 Protein phosphatase 2C family protein (.1) AT1G07160 234 / 1e-73 Protein phosphatase 2C family protein (.1) AT2G30020 233 / 6e-73 Protein phosphatase 2C family protein (.1) AT2G40180 228 / 7e-71 ATHPP2C5 phosphatase 2C5 (.1) AT4G31750 155 / 6e-44 WIN2 HOPW1-1-interacting 2 (.1) AT4G08260 151 / 1e-43 Protein phosphatase 2C family protein (.1) AT5G24940 156 / 4e-43 Protein phosphatase 2C family protein (.1) AT5G10740 151 / 5e-42 Protein phosphatase 2C family protein (.1) AT1G43900 144 / 3e-39 Protein phosphatase 2C family protein (.1) AT3G27140 135 / 4e-37 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006222 [exp] 677 / 0 AT1G67820 382 / 6e-130 Protein phosphatase 2C family protein (.1) Lus10042275 [exp] 223 / 5e-69 AT1G07160 392 / 1e-135 Protein phosphatase 2C family protein (.1) Lus10026381 [exp] 218 / 2e-67 AT1G07160 390 / 4e-135 Protein phosphatase 2C family protein (.1) Lus10041072 [exp] 187 / 5e-56 AT1G07160 238 / 3e-76 Protein phosphatase 2C family protein (.1) Lus10026239 [exp] 151 / 6e-43 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1) Lus10042430 [exp] 150 / 1e-42 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1) Lus10020104 [exp] 149 / 2e-41 AT4G31750 523 / 0.0 HOPW1-1-interacting 2 (.1) Lus10026908 [exp] 146 / 1e-40 AT4G31750 484 / 1e-174 HOPW1-1-interacting 2 (.1) Lus10014926 [exp] 137 / 5e-37 AT5G53140 448 / 3e-158 Protein phosphatase 2C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G047600 [exp] 445 / 3e-155 AT1G67820 399 / 2e-136 Protein phosphatase 2C family protein (.1) Potri.009G073000 [exp] 246 / 1e-77 AT2G30020 466 / 9e-164 Protein phosphatase 2C family protein (.1) Potri.001G278500 [exp] 245 / 1e-77 AT2G30020 451 / 2e-158 Protein phosphatase 2C family protein (.1) Potri.008G070400 [exp] 229 / 2e-71 AT2G40180 365 / 1e-124 phosphatase 2C5 (.1) Potri.010G187000 [exp] 226 / 3e-70 AT2G30020 381 / 6e-131 Protein phosphatase 2C family protein (.1) Potri.013G099400 [exp] 209 / 5e-63 AT1G07160 272 / 1e-87 Protein phosphatase 2C family protein (.1) Potri.019G071600 [exp] 205 / 2e-61 AT1G07160 268 / 8e-86 Protein phosphatase 2C family protein (.1) Potri.006G267600 [exp] 157 / 1e-44 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.018G013900 [exp] 155 / 2e-44 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.015G019200 [exp] 139 / 2e-37 AT5G53140 492 / 5e-175 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10036871 pacid=23171131 polypeptide=Lus10036871 locus=Lus10036871.g ID=Lus10036871.BGIv1.0 annot-version=v1.0 ATGGAGGCGAATTTCCCCAATTCAGCCCTAAAGCTACCATCTCTATCTTCTTCCCTGAAGCGGAAGCGGCCGCCTACGATCAAGATTCCGAATGTACTTG AAGAAATCAGCTTACAAACTCCCAAGTTCAGGAATCCCTTCGCCGGGCCGGCAGCGACCGGCGACGGCGGCGTCGTTTCATATTCTGGGGAAGGCTTCGC TGTCTCTGCTGTTAAGGGGAAGAAGAAGTTGATGGAAGATTCCCACAAGATCATCTCTTGCTTGAATGGCTGCTCCCGCAATGGTTTCTTTGGGGTGTAT GATGGGCATGGCGGGAAGAAAGCTGCGGAATTTGCTGCGGAGAATTTGCATTGTAATATTATGGCAATGATGGAGGGTTGTGGTGATGAAGTTTGTAAAG AGGAAGCTGTGAAAGCTGGTTATTTAAAGACTGATCAACAGTTCCTGGATCAGGGTTTGTTGAGTGGTTCTTGCTGTGTGACGGCCTTGATCCAAGGGGG CGAGATGGTTGTTTCGAATTTGGGAGATTGTAGGGCGGTTCTTTGTCGAGGTGGAGTGGCCGAAGCGATTACTACAGATCATAGAGCAGAAAGGGAGGAT GAAAGGGAAAGAATAGAGAATCAGGGAGGATATGTTGAGATCCACCGGGGGGCTTGGAGAGTTCATGGGATACTTTCGGTGTCAAGGAGCATTGGGGATG CGCATCTCAAGGCGTGGGTCTCGGCTGAGCCAGATACGAAGATTCTGCAGCTGGAACCCGACATGGAGTTTCTTGTCTTGGCTTCTGATGGACTATGGGA AGTGGTTGGGAATCAAGAAGCTGTTGACATTGTGACTGAATTATGTAGAGAGGACGGAATCGAGTGTGGCCTCGTTAATGTAAGTCCTTCCCCGAAACTG CGAAGGGTTTCGCTGGTCAAGCAGAACCAGACATTACAGAAGGCCACTGAAGGTTGCTGCCAAGAAGATGACGGGTTTCCAAGCGAAAAGGACGCTCCTC CTCCTTTGAAGTCGAGACGGATTAATCTAGTCAAGAAGATAAACACGAAGATCGAGTCTCCTAACAAAGAGAACAACAAAGCATCTCCTTCCTCCATAGA GGGGATTGCTAATGCCTGCAAGGGGCTGGTGAGCCTTGCTGTTAGTAGAGGTAGTTTGGATGATATAACTGTGCTGATAATTGATCCGAGTTACTTCCGA AACAAGCAAGCAATATGA
AA sequence Show only first row Show all	>Lus10036871 pacid=23171131 polypeptide=Lus10036871 locus=Lus10036871.g ID=Lus10036871.BGIv1.0 annot-version=v1.0 MEANFPNSALKLPSLSSSLKRKRPPTIKIPNVLEEISLQTPKFRNPFAGPAATGDGGVVSYSGEGFAVSAVKGKKKLMEDSHKIISCLNGCSRNGFFGVY DGHGGKKAAEFAAENLHCNIMAMMEGCGDEVCKEEAVKAGYLKTDQQFLDQGLLSGSCCVTALIQGGEMVVSNLGDCRAVLCRGGVAEAITTDHRAERED ERERIENQGGYVEIHRGAWRVHGILSVSRSIGDAHLKAWVSAEPDTKILQLEPDMEFLVLASDGLWEVVGNQEAVDIVTELCREDGIECGLVNVSPSPKL RRVSLVKQNQTLQKATEGCCQEDDGFPSEKDAPPPLKSRRINLVKKINTKIESPNKENNKASPSSIEGIANACKGLVSLAVSRGSLDDITVLIIDPSYFR NKQAI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67820			Protein phosphatase 2C family ...		Lus10036871 [exp]	0	1
AT5G42330			unknown protein		Lus10013229 [exp]	2.8	0.9481
AT1G67820			Protein phosphatase 2C family ...		Lus10006222 [exp]	6.6	0.9440
AT4G33400			Vacuolar import/degradation, V...		Lus10042656 [exp]	12.2	0.9293
AT5G42330			unknown protein		Lus10030749 [exp]	16.0	0.9269
AT4G35050		NFC3, MSI3	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10027848 [exp]	16.4	0.9190
AT5G56120			unknown protein		Lus10008355 [exp]	17.4	0.9143
AT5G66230			Chalcone-flavanone isomerase f...		Lus10025961 [exp]	20.0	0.9244
AT1G16630			unknown protein		Lus10006845 [exp]	20.2	0.9222
AT1G50240		FU	FUSED, Protein kinase family p...		Lus10039168 [exp]	22.1	0.9155
AT4G14330			P-loop containing nucleoside t...		Lus10021167 [exp]	24.5	0.9186

Compare expression of checked genes

Lus10036871 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.