Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26430 275 / 1e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G14450 273 / 9e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G27950 265 / 7e-87 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G67830 242 / 6e-78 ATFXG1 Arabidopsis thaliana alpha-fucosidase 1, alpha-fucosidase 1 (.1) AT1G54790 229 / 8e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) AT3G05180 211 / 9e-66 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G56670 202 / 1e-62 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G62280 198 / 4e-61 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G09390 191 / 5e-58 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G01130 185 / 8e-56 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006224 [exp] 603 / 0 AT3G26430 342 / 5e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10032094 [exp] 285 / 2e-94 AT5G14450 578 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10008784 [exp] 282 / 1e-93 AT3G27950 391 / 2e-135 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10014592 [exp] 280 / 2e-92 AT5G14450 573 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003021 [exp] 273 / 4e-90 AT3G26430 385 / 4e-133 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029638 [exp] 237 / 9e-76 AT1G54790 443 / 2e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10029980 [exp] 234 / 1e-74 AT1G54790 578 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10011051 [exp] 227 / 2e-72 AT3G26430 340 / 1e-115 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029639 [exp] 222 / 4e-70 AT1G54790 421 / 4e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G342600 [exp] 296 / 5e-99 AT5G14450 595 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G047900 [exp] 290 / 2e-96 AT3G26430 504 / 1e-179 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G177700 [exp] 283 / 8e-94 AT3G26430 407 / 2e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G083700 [exp] 280 / 1e-92 AT3G26430 417 / 3e-145 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G083800 [exp] 276 / 4e-91 AT3G26430 405 / 8e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G185500 [exp] 275 / 9e-91 AT3G26430 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G074400 [exp] 266 / 3e-87 AT3G26430 388 / 8e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G026300 [exp] 236 / 9e-76 AT1G54790 605 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.005G038800 [exp] 227 / 4e-72 AT1G54790 595 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.002G216000 [exp] 215 / 3e-67 AT1G54790 474 / 1e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10036873 pacid=23171284 polypeptide=Lus10036873 locus=Lus10036873.g ID=Lus10036873.BGIv1.0 annot-version=v1.0 ATGATCATCGATTTCCTAGCCGAGAAGCTGAGACTGCCGTACTTGAGCTCGTTCCTTGATTCCTTGGAATCGAACTTCACCCACGGAGCGAATTTCGCTT CGAGTGGAGCCACCGTCCAGCCCCCCAGCGGGGCTTTGCTCGACGGTGGGTTTAATCCTGTGACGTTCGAGTACCAGGTGCTGCAGTTTCAGCAGCTTAA AGATAGAACCTTTGAGCTGAGAAAACAAGGTGGGTTGGTGGATCGGCTTCCGAAACTTGAGGAGTTCAAATCAGCTCTTTATATGCTGGATTGTGGGCAG AATGACCTTCACTTTGGTCTGGCTTACTTTGGGAAGCAAGGAGCACTCTCTTCAATCCCCTTAGTCATCAACAACTTTTCTCTAACCATAGAGAAACTTT ACGAAGAAGGAGCAAGAACGTTTTGGATCCACAACACGGGCCCGATCGGGTGCTTGCCATTCTTCGTGAAGAGGCTCCCTCCGAAACCCGGAGATGCAGA CCCAGTTGGGTGCATCAAGTCCTACAATGAAGTGGCCACAGAGTTCAACAGACAGCTCAATGCAACGGTTTACAAGCTCAGAACAAAGTTCCCTGATGCA CTCATGGCCCTAGTGGACATGTATTCCGCCAAGTACTCCCTCATCCGCGAGGCCAATAAGTACGGTTTTGAGGACCCGCTAGGGTTCTGCTGCGGCCACT TGGGGGATTATGAGGTGAACTGTGGTAGGGATGTGAAACTGGAGAATGGAACTGTTGTTCGTGGAATTGCGTGCAGAGATCCATCGAAATATATCAGCTG GGACAATATACATTACACAGAAGCTGCAAATCGGTGGGTTGCTGAACGGATTTCCGATGGATCGCTGTCGGATCCTCCGATACCGATTGTTGAAGCTTGT AGCAGTGTCGCAAGTCACTATAGATGCTAG
AA sequence Show only first row Show all	>Lus10036873 pacid=23171284 polypeptide=Lus10036873 locus=Lus10036873.g ID=Lus10036873.BGIv1.0 annot-version=v1.0 MIIDFLAEKLRLPYLSSFLDSLESNFTHGANFASSGATVQPPSGALLDGGFNPVTFEYQVLQFQQLKDRTFELRKQGGLVDRLPKLEEFKSALYMLDCGQ NDLHFGLAYFGKQGALSSIPLVINNFSLTIEKLYEEGARTFWIHNTGPIGCLPFFVKRLPPKPGDADPVGCIKSYNEVATEFNRQLNATVYKLRTKFPDA LMALVDMYSAKYSLIREANKYGFEDPLGFCCGHLGDYEVNCGRDVKLENGTVVRGIACRDPSKYISWDNIHYTEAANRWVAERISDGSLSDPPIPIVEAC SSVASHYRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10036873 [exp]	0	1
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10006224 [exp]	1.0	0.9664
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Lus10007976 [exp]	2.4	0.9284
AT3G01060			unknown protein		Lus10030700 [exp]	5.3	0.8941
AT1G60420			DC1 domain-containing protein ...		Lus10005618 [exp]	5.5	0.8862
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10003399 [exp]	7.9	0.9100
AT4G02425			unknown protein		Lus10030370 [exp]	8.3	0.8589
AT3G21890	CO		B-box type zinc finger family ...		Lus10031583 [exp]	8.4	0.8990
AT3G01060			unknown protein		Lus10005219 [exp]	8.5	0.8968
AT4G14690		ELIP2	EARLY LIGHT-INDUCIBLE PROTEIN ...		Lus10039379 [exp]	13.0	0.8800
AT4G15248	CO		B-box type zinc finger family ...		Lus10039694 [exp]	13.1	0.9013

Compare expression of checked genes

Lus10036873 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.