Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13020 268 / 4e-83 EIF4B2 eukaryotic initiation factor 4B2 (.1) AT3G26400 248 / 8e-76 EIF4B1 eukaryotic translation initiation factor 4B1 (.1) AT4G38710 65 / 7e-11 glycine-rich protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011412 [exp] 314 / 1e-100 AT3G26400 387 / 3e-129 eukaryotic translation initiation factor 4B1 (.1) Lus10006224 [exp] 246 / 6e-73 AT3G26430 342 / 5e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006469 [exp] 176 / 2e-50 AT3G26400 205 / 1e-61 eukaryotic translation initiation factor 4B1 (.1) Lus10012166 [exp] 64 / 6e-11 AT4G38710 159 / 2e-44 glycine-rich protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G048200 [exp] 339 / 8e-111 AT3G26400 349 / 1e-114 eukaryotic translation initiation factor 4B1 (.1) Potri.008G185400 [exp] 319 / 6e-103 AT3G26400 325 / 5e-105 eukaryotic translation initiation factor 4B1 (.1) Potri.009G130200 [exp] 62 / 3e-10 AT4G38710 192 / 1e-56 glycine-rich protein (.1.2) Potri.004G169100 [exp] 56 / 3e-08 AT4G38710 149 / 1e-40 glycine-rich protein (.1.2) Potri.014G123100 [exp] 51 / 1e-06 AT3G26400 55 / 3e-08 eukaryotic translation initiation factor 4B1 (.1) Potri.002G198700 [exp] 49 / 5e-06 AT3G26400 50 / 1e-06 eukaryotic translation initiation factor 4B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06273 [flax] [poplar] eIF-4B Plant specific eukaryotic initiation factor 4B
Representative CDS sequence Show only first row Show all	>Lus10036874 pacid=23171013 polypeptide=Lus10036874 locus=Lus10036874.g ID=Lus10036874.BGIv1.0 annot-version=v1.0 ATGTCGAAACCCTGGGGCAACATCGGAACCTGGGCCGCTGAGGCCGAGCGCGAGGAAGAAGAAATGGAAGCTGCAGCCGCCTCCGCCGCCAAAGCTCCTC CTCCCGACACCAAGAGCTACCCTAGCTTGCGAGAAGCTGTCACAACCAAGCCGAAGAAGAAGAAGATGAGCCTCAACGAGTTCNNNNNNTGTGGCGGCGG TGGTAGGAGGCCGTACGGCGGTGGCTTCGACGACGATCAGCGCCGCGGTGGTGGTGGTCCGGGTTCTTCTAGGGTTTCGGATTACGATCAGGTTTCGCGA GCTGATGAGGCTGATAATTGGTCAATGGGGAAGAAATCTCTCCCGTCAATGGATTCCGGGAGACAAAGCAGGTATGGTTCGCTTGGAAGTGGCGGCGGTG GTGCTTCCAGGGCTGATGAAGTGGATAACTGGGCTTCTGATAAGAAGCCAATGTCGTTTGCGCCTCCTTCTAGGTCGTCAAATTTTGGGTTCCGTAGCTC CGGTCCGGAGAATGATCGGTGGACTAGAGGGGGAGGAGGAGGAGGAGGAAGCAATGAGGTGGAGCAGGAGAGGTCGGAGAGGCCGAGGTTGGTATTGAAT CCACCGAAAGTAGATGTAGCAATAACTGTAACTGAGGTGAGTAAGACAAACAAGCCGAACCCATTTGGGACGGCGAGGCCAAGGGAGGAGGTTTTAGCTG ACAAGGGGATGGACTGGAGGAAGCTGGAGACTGACCTTGAGTCAAAGAAGAGTTTTTCTCACTCTAGTAGGCCGACAAGTGCTCATTCGAGCAGGCCTTC TAGTGCACATTCTGGCAGGTCTGAGACTGTTGTTCCAGCTGGGTTACTACAGCAAGGGTTAGAAAATGTGGAGAGACCTGCTAAGCCGAAGGTGAATCCT TTTGGGGATGCTAAGCCAAGAGAAGTGTTGTTGCAGGAACGAGGGCAGGACTGGCGGAAGATGGATCGTGAATTGGAGCATCGCAGTATCGACAGACCTG AAACTGAGGAAGAAAAATTGTTGAAAGAAGAAATCAATAAACTAAAAGAGGATGTTCAGAAGGGGCCTTCGGTACAAGAGAACAAGGAACCTGTACAAGT GTCTGATGGTAATCAATCCAGCTTAAAAGAGATTATAAGTCAGAAGGAAAAGGAACTAGAAACACTGATCCGCGATCTGGATGACAGAGTTCGATTTTGC CAGAAACCCCTCGAAAGGCCTGGTTCTGGTGCTGGTAGGAGTCCTGCGTTCTCTGACAGACCACCTTCTCGATCTGGATCAGTTGATGAATCCAGAAATA CAGAGTTTATGGACAGGCCTCGCTCTCGTGGCGCACCAGATATCTGGACAAGGCCTGTTGACGAGAGAAGACCGTATCAAGGAGGCAGAGGAGAAAGAGG ATTTCTGGGTAACAGAGAATTTGACAGGTTGATCTTCTATTTTTTGCCTCCTCACACATTCATATTATGTTTCTTTCTCCATCATTGCATCTCAGTTTGG CCATCATTAGGGATACCAAAGTTTGTTTACCAGATATCTTATAATCTGATCATCTATCTCAGTTACTGA
AA sequence Show only first row Show all	>Lus10036874 pacid=23171013 polypeptide=Lus10036874 locus=Lus10036874.g ID=Lus10036874.BGIv1.0 annot-version=v1.0 MSKPWGNIGTWAAEAEREEEEMEAAAASAAKAPPPDTKSYPSLREAVTTKPKKKKMSLNEFXXCGGGGRRPYGGGFDDDQRRGGGGPGSSRVSDYDQVSR ADEADNWSMGKKSLPSMDSGRQSRYGSLGSGGGGASRADEVDNWASDKKPMSFAPPSRSSNFGFRSSGPENDRWTRGGGGGGGSNEVEQERSERPRLVLN PPKVDVAITVTEVSKTNKPNPFGTARPREEVLADKGMDWRKLETDLESKKSFSHSSRPTSAHSSRPSSAHSGRSETVVPAGLLQQGLENVERPAKPKVNP FGDAKPREVLLQERGQDWRKMDRELEHRSIDRPETEEEKLLKEEINKLKEDVQKGPSVQENKEPVQVSDGNQSSLKEIISQKEKELETLIRDLDDRVRFC QKPLERPGSGAGRSPAFSDRPPSRSGSVDESRNTEFMDRPRSRGAPDIWTRPVDERRPYQGGRGERGFLGNREFDRLIFYFLPPHTFILCFFLHHCISVW PSLGIPKFVYQISYNLIIYLSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26400		EIF4B1	eukaryotic translation initiat...		Lus10036874 [exp]	0	1
AT4G22670		ATHIP1, TPR11	tetratricopeptide repeat 11, H...		Lus10032227 [exp]	1.7	0.9056
AT5G51280			DEAD-box protein abstrakt, put...		Lus10023252 [exp]	2.4	0.8765
AT5G42790		ARS5, ATPSM30, ...	ARSENIC TOLERANCE 5, proteasom...		Lus10024269 [exp]	4.2	0.8431
AT5G63870		PP7, ATPP7	serine/threonine phosphatase 7...		Lus10020898 [exp]	5.5	0.8263
AT4G31300		PBA1	N-terminal nucleophile aminohy...		Lus10020180 [exp]	6.3	0.8350
AT2G01710			Chaperone DnaJ-domain superfam...		Lus10009275 [exp]	7.1	0.8220
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035215 [exp]	7.9	0.8390
AT3G09070			Protein of unknown function (D...		Lus10035513 [exp]	8.9	0.8501
AT1G79930		AtHsp70-14, HSP...	heat shock protein 91 (.1.2)		Lus10037529 [exp]	9.2	0.8584
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10025276 [exp]	11.0	0.8324

Compare expression of checked genes

Lus10036874 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.