Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26370 910 / 0 O-fucosyltransferase family protein (.1) AT3G26380 598 / 0 Melibiase family protein (.1) AT2G01480 330 / 1e-100 O-fucosyltransferase family protein (.1) AT4G24530 329 / 1e-100 O-fucosyltransferase family protein (.1) AT5G65470 328 / 1e-100 O-fucosyltransferase family protein (.1) AT1G14970 311 / 2e-93 O-fucosyltransferase family protein (.1) AT1G38131 293 / 1e-86 O-fucosyltransferase family protein (.1) AT4G38390 292 / 1e-86 RHS17 root hair specific 17 (.1) AT1G29200 290 / 1e-86 O-fucosyltransferase family protein (.1.2.3) AT1G38065 286 / 1e-85 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006226 [exp] 870 / 0 AT3G26380 753 / 0.0 Melibiase family protein (.1) Lus10006227 [exp] 864 / 0 AT3G26370 786 / 0.0 O-fucosyltransferase family protein (.1) Lus10011407 [exp] 474 / 1e-155 AT3G26380 476 / 3e-163 Melibiase family protein (.1) Lus10006467 [exp] 447 / 1e-146 AT3G26380 455 / 4e-156 Melibiase family protein (.1) Lus10012732 [exp] 320 / 1e-97 AT5G65470 765 / 0.0 O-fucosyltransferase family protein (.1) Lus10002653 [exp] 321 / 2e-97 AT5G65470 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10009276 [exp] 320 / 5e-97 AT4G24530 801 / 0.0 O-fucosyltransferase family protein (.1) Lus10013460 [exp] 319 / 9e-97 AT2G01480 868 / 0.0 O-fucosyltransferase family protein (.1) Lus10003715 [exp] 315 / 1e-94 AT2G01480 897 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G185200 [exp] 955 / 0 AT3G26370 905 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G048500 [exp] 954 / 0 AT3G26370 893 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G048400 [exp] 615 / 0 AT3G26380 772 / 0.0 Melibiase family protein (.1) Potri.008G185300 [exp] 588 / 0 AT3G26380 830 / 0.0 Melibiase family protein (.1) Potri.010G048300 [exp] 585 / 0 AT3G26380 815 / 0.0 Melibiase family protein (.1) Potri.010G111500 [exp] 332 / 3e-101 AT2G01480 906 / 0.0 O-fucosyltransferase family protein (.1) Potri.007G011000 [exp] 327 / 5e-100 AT5G65470 784 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G130600 [exp] 320 / 1e-96 AT2G01480 912 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G105800 [exp] 311 / 6e-94 AT4G24530 807 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G087300 [exp] 309 / 2e-92 AT1G38131 704 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10036875 pacid=23171221 polypeptide=Lus10036875 locus=Lus10036875.g ID=Lus10036875.BGIv1.0 annot-version=v1.0 ATGGCGGAGCTACGCCACTCGAGCTCGCTCGGAGCCAGAGCTACAGCTACTTCTTCTCCGATGAAGCGCGAGGAGAAGGACTCGTCGCCCCTCATCCACC ACGATAAATCCCCCGCCAAAGTCGACGACGATGACGGTGGCGATCGCCGCCACCACTTCGCCAGGGATCGCGACCGTCCGTTCTGGTCGAATCTGCCGTT CCTCGGCGACGACCTTAGGTTTTGGTATCAGAACTCTAGGATCTCCATGATTTTGCTTGGCGTTGTTGCTTTCGCCGGGCTGATCTCGATTTTCTCCGTC TTCCATCGATTGAATGCTCCGTACTTGTGTAAAAAGGATGGCATTGTTCTCCACTGTCCACATGTGAAGGAGTCTTCTTCGCTATGGGACAATCCATTAT CGGCAACAACTTCTTGGAAGCCTTGTGCTGAGCGTCGCGATGGTGGAAATTCAGATGTTCCTCGCGAGAATGAAACAAATGGTTATATCTTCGTCCATGC AGAGGGTGGTCTGAACCAGCAAAGAATTGCTATATGCAATGCAGTCGCTGTAGCAAAAATATTGAATGCCACCCTGATTTTACCTGTGTTGAAGCAGGAT CAAATTTGGAAAGACCAGACGAAATTTGAGGACATATTCGATGTTGAACATTTCATTGATTATTTAAAGGATGATCTGAGAATTGTTCGTGATATACCTG AGTGGTTTACTGACAAAAATGAGTTATTTACAAGCATAAGGCGGACAGTGAAAAATATTCCAAAATATGCACCGGCACAGTTTTACATCGACAATGTCTT GCCACGAATCAAGGAGAAGAAAATTATGGCACTGAAGCCTTTTGTTGATCGGCTTGGGTATGATAACGTGCCACAAGAAATCAACAGGTTGAGATGCCGA GTTAATTATCATGCTCTGAAATTCCTTCCTCATATCGAGCAGATGGCTGATCTATTAGTGTCAAGGATGCGGAACCGTACCGGCAGTCCAATTCCTTATA TGGCTCTGCATCTTAGATTTGAGAAAGGGATGGTTGGTTTATCCTTCTGCGATTTCGTGGGTACTAGAGATGAGAAAGCTAAGATGGCCGAGTACAGGAA GAAAGAATGGCCTAGGCGTTACAAGAATGGTTCCCATCTATGGCAACTAGCCCTCCAGAAAAGAAAGGAAGGACGGTGCCCCCTTGAACCCGGCGAGGTA GCAGTGATCCTCCGAGCAATGGGCTATCCCAAGGAAACTCAGATATACGTAGCTTCCGGGCAAGTCTACGGTGGGCAAAACCGAATGGCTCCTCTACGGA ACATGTTCCCAAATCTGGTTACGAAAGAGGAGCTAGCGGCCAACGATGAGCTGACCAGTTTCAGGAAGCACGTAACGAGCTTAGCAGCGCTCGACTTCCT CGTGTGCCTTAAATCAGACGTCTTTGTCATGACCCATGGTGGCAACTTTGCCAAGCTGATTATCGGGGCGCGTCGATACATGGGTCATCGCCAGAAGTCG ATAAAGCCAGACAAGGGACTGATGTCCAAGTCCTTTGGGGATCCTTACATGGGTTGGGCAACTTTCGTAGAGGATGTGGTGGTAACCCATCAAACAAGAA CTGGATTGCCTGAGGAGACATTCCCCAACTATGATCTCTGGGAGAACCCTTTGACTCCTTGCATGTTCCCTGACAAGATTTCGATCATAATCGCCTGTTC TGAGGAGTTCGTCGAAGTTCGTTGGGTGGGTCTAGAGCCCGTTATTGATGGCAGTCCGACTGGGCCCTCTGGTCCCTTTCTAAGTTCTACTAACAACACT GGTATTACTAAAGACAGGTACATTACGTGGACAGTAACTAAGCGGGTTTTCAGCAACACTTACACCATCAAAACCAAAATGCGGAAATTTAGCAGTCTCC GTCGACGGGCTCTAGCCTTTAACTTGTTACTGCAATGTAACTCCGTGGTTTCATCATCATCGGCAGTAGGTAACCGATGTAAGCTGCCACCAAGAGGTTG GAACTCTTATGATTCCTACTGCTGGACGATTTCTGAACAAGACTTCTTGCAGAGTGCTCAAATTGTTGCCAAGTATCTAAAACACCATGGATATGAGGAT GTTGTGGTGGATTACCTTTGGTATAGAAGACTGGTACCAGGTTCCTACGTTGATGCTTTAGGGTTTGATGTGATTGATGAATGGGGGAGGATGGTTCCCG CCCCGGATCGATGGCCTTCAGCGAATTCAGGGAAAGGGTTTGCTGAAGTTGCTGATAAAGTTCATAGTTTGGGTCTCAAGTTTGGAATCCATGTAATGAG AGGATTGAGCCGGCAGGCTTATGATGCCAACACTCCTATACTGGACATTTCCACGGGGCGTGCTTACGAAGAATCTGGCCGAAAATGGAGCACACAGGAC ATAGGGATCAAGGAGAGGAGTTGTGCATGGATGGAAAATGGCTTCATGAGTGTCAACACTTCATTGCCTGCTGGGAGAGCATTCTTGAGGTCACTTTATC ACCAGTATGCTGATTGGGGCGTCGATTTTATCAAGCATGATTGCGTGTTCGGTGAAGACTTCAACCTTGAAGAGATAAAATTCGTGTCCGGGGTTCTGAA ACAGCTCGATCGCCCTATCGTATACTCGCTGTCCCCAGGAACTTCAGTCACACCAGCTATGGCTGACGAACTGCGCGGATTAGCAAACATGTACAGGGTA ACAGCAGACGATTGGGATTCGTGGCGAGACGTGGCTTCACATTTTGATGTTTCGAGGGACTTTGCGAAAGCTAAAATGGTCCCGGCTGAAGGTTTGCTTG GGAGTTCGTGGCCCGACTTAGATATGCTACCCTTGGGTTGGCTTACTGACCAAGGTTCAAATGTAGGGCCTCATAGGCAGTGTAACCTTACTATAGATGA GCAAAGAACTCAGATGACACTGTGGTCGATGGCAAGGTCCCCGCTTATGTTTGGAGGAGACATTCGGAAGCTCGATATGAATACTTACAAGCTGATCACT CACCCTACCTTGCTTGAAATCAACGATTACAGCTCAAATAATATGGAGGCATGCAAGGTCGTTGATCCCACGAGGCGATCGAGGAATTCCTTGTTGAAAC GTGGCAATGATCGTACCGGGGTGGACATAGGTCTCACTAGTTGCAAAGATCGTAATGTGAATGGTTGGTCAGTTGAATCTCTTGACGAGTACCAGGAACA GATATGCTGGAGAAAGGACGAGGCCAGCCAAGATTACCGTTATGCCTATACAAGCAAAAGCCTCTCTTATCTTCGACCAACTAACGAGGCAGGGATCAGC GGGGTTCGATCATGGATCGCGACTGGAAGACAAGGAGAAATTTATGTGGCTCTATTCAACCTCAATACAGAGGGAACACTGATCTCCATGAAGTTATCAG ACATGGCCAAGGTGCTTCCTGGAACAAACCTGGGAAGCAAAGCAGCAGCTTGTAAAGGAATAGAAGTAGGGAGCGGCCAACGTTTTGAAGCCGTGGAGGA TTCGCTGGAAATGGTGGTGGATAAACATGGTTGTGCTCTCTTTATACTGAACTGCAAGGCATAG
AA sequence Show only first row Show all	>Lus10036875 pacid=23171221 polypeptide=Lus10036875 locus=Lus10036875.g ID=Lus10036875.BGIv1.0 annot-version=v1.0 MAELRHSSSLGARATATSSPMKREEKDSSPLIHHDKSPAKVDDDDGGDRRHHFARDRDRPFWSNLPFLGDDLRFWYQNSRISMILLGVVAFAGLISIFSV FHRLNAPYLCKKDGIVLHCPHVKESSSLWDNPLSATTSWKPCAERRDGGNSDVPRENETNGYIFVHAEGGLNQQRIAICNAVAVAKILNATLILPVLKQD QIWKDQTKFEDIFDVEHFIDYLKDDLRIVRDIPEWFTDKNELFTSIRRTVKNIPKYAPAQFYIDNVLPRIKEKKIMALKPFVDRLGYDNVPQEINRLRCR VNYHALKFLPHIEQMADLLVSRMRNRTGSPIPYMALHLRFEKGMVGLSFCDFVGTRDEKAKMAEYRKKEWPRRYKNGSHLWQLALQKRKEGRCPLEPGEV AVILRAMGYPKETQIYVASGQVYGGQNRMAPLRNMFPNLVTKEELAANDELTSFRKHVTSLAALDFLVCLKSDVFVMTHGGNFAKLIIGARRYMGHRQKS IKPDKGLMSKSFGDPYMGWATFVEDVVVTHQTRTGLPEETFPNYDLWENPLTPCMFPDKISIIIACSEEFVEVRWVGLEPVIDGSPTGPSGPFLSSTNNT GITKDRYITWTVTKRVFSNTYTIKTKMRKFSSLRRRALAFNLLLQCNSVVSSSSAVGNRCKLPPRGWNSYDSYCWTISEQDFLQSAQIVAKYLKHHGYED VVVDYLWYRRLVPGSYVDALGFDVIDEWGRMVPAPDRWPSANSGKGFAEVADKVHSLGLKFGIHVMRGLSRQAYDANTPILDISTGRAYEESGRKWSTQD IGIKERSCAWMENGFMSVNTSLPAGRAFLRSLYHQYADWGVDFIKHDCVFGEDFNLEEIKFVSGVLKQLDRPIVYSLSPGTSVTPAMADELRGLANMYRV TADDWDSWRDVASHFDVSRDFAKAKMVPAEGLLGSSWPDLDMLPLGWLTDQGSNVGPHRQCNLTIDEQRTQMTLWSMARSPLMFGGDIRKLDMNTYKLIT HPTLLEINDYSSNNMEACKVVDPTRRSRNSLLKRGNDRTGVDIGLTSCKDRNVNGWSVESLDEYQEQICWRKDEASQDYRYAYTSKSLSYLRPTNEAGIS GVRSWIATGRQGEIYVALFNLNTEGTLISMKLSDMAKVLPGTNLGSKAAACKGIEVGSGQRFEAVEDSLEMVVDKHGCALFILNCKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26370			O-fucosyltransferase family pr...		Lus10036875 [exp]	0	1
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10015274 [exp]	2.4	0.8899
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Lus10010071 [exp]	2.6	0.8803
AT3G26370			O-fucosyltransferase family pr...		Lus10006227 [exp]	6.0	0.8945
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10013468 [exp]	6.9	0.8866
AT1G31780			unknown protein		Lus10037281 [exp]	7.5	0.8993
AT5G54200			Transducin/WD40 repeat-like su...		Lus10027671 [exp]	8.0	0.8769
AT4G31340			myosin heavy chain-related (.1...		Lus10036424 [exp]	9.0	0.8491
AT3G62720		ATXT1, XXT1	XYG XYLOSYLTRANSFERASE 1, xylo...		Lus10037521 [exp]	9.2	0.8659
AT2G15240			UNC-50 family protein (.1)		Lus10027865 [exp]	11.7	0.8540
AT5G54200			Transducin/WD40 repeat-like su...		Lus10039934 [exp]	13.4	0.8838

Compare expression of checked genes

Lus10036875 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.