Plant FIBer expression Database

Lus10036876 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G13030 186 / 4e-51 sphere organelles protein-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006228
[exp]
955 / 0 AT1G13030 320 / 4e-101 sphere organelles protein-related (.1)
Lus10011406
[exp]
176 / 4e-46 AT3G26350 209 / 5e-60 unknown protein
Lus10006465
[exp]
125 / 7e-32 AT1G13030 91 / 3e-20 sphere organelles protein-related (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G048700
[exp]
236 / 9e-69 AT1G13030 194 / 1e-53 sphere organelles protein-related (.1)
Potri.008G185100
[exp]
223 / 7e-64 AT1G13030 199 / 1e-55 sphere organelles protein-related (.1)
PFAM info
Representative CDS sequence
>Lus10036876 pacid=23171137 polypeptide=Lus10036876 locus=Lus10036876.g ID=Lus10036876.BGIv1.0 annot-version=v1.0
ATGGAGACAGTGAGGCTCCGTTTAGTGTTCGAAAAAGCTCTTGCCGAATCCCTAAAGAAGAAGACAGGCGGGCTGAAACGTTTCTGGGTTCTCCTAAAAC
CTCAGCACAAAACCATCTACGATCTTTCCCGTTACCTCCTTGACGTCTTCGACCTCCACAATGCCTGCCCTGAAGGCCTTCTCCTCTCTATGGAAGGGTT
CTATTTGCCGCCATTCGAGTCCAGTTGCGTGTTGAAGGACAGAGATATTGTCCGGGTGAAGAGTAAGACGAATTCGGGAATGTTGGAGTTAGTTGCTGGT
GATGGTGGTGGCGTTAAGTTTTTGGCGAATGAAGAGTTTGAGAAAGAAGCTGGAGGGTATGAGAGTGATGATCCGGAAGAGGAGGATTCTAAGCTTGAGG
ATGCAATGCTGCATGTGGAGGAAACACCAGAAATGAAGAAGGTTTCTAAAAAGAGGAAGGCTTCTGAGGAACTTGGGAGCTCAAAGAAGAAGAAGAAGAA
GAAGAAGAAGGAGATAGCTTCTAGTGCTGAGAAATGTGCTGCTAAAGTTAGCAAGACTGGTGACGAAGGCACCTCAAAAGCCAAGAAGTCAAGTGGACCT
AATCAATGCAGTGATGATCATGTGGATGCATCATGCTCACCTTCTGGAGATAAAAAGGTCCCGAGTAGAAGTGCTCGTCGTAAAAAGGCCAAAAGACAGT
GGCTAAAGGAGATAAAAAGAGCTGAGAAAGAAAAAGAAGAGAAGCATTTGTCTGCAATACCGAACGGGAAAGCTAGTCAAAAGAAGAATCACAAAGCCAC
TCCACACCTAGTGGAAAAAACAGAGAAGCATTCGCCTGTGACACCGAATGAGAAAGCTAGTAAAAAGAAGAAGCCCAAAACCATGAAAGAACCGGTGGAA
AAAAATATGCATACTTCGGTTGAAGAAGTTCCGGATAAGGGTAACGAAAAGGTTCAGGTGGACGATGATGAACAACCAGATCAAAATAGCGACAAGGATG
ACAACGAAATTGTGCCCATTGTAATAAGACCAGGACATATCCGCTTCGAGCCTCTTGAGAAAGTCTCTGTTCCAGGTAGTGCTGATCAGACAGTCCAGCA
CAATCAAACTCTAGTGGATACTTCGCAATGGAATGGGATGAGCAAAAAGAAAGGCCAGAAATGGGGAAAACAGAACAGCGAGTCATGGAAATGGAACGAG
AATGGAAACTCCGTCCATAAACCTTCTGAAACATGGAAAGAGAACTCGAATTCCTGCCAAAAACCTTCTGAAACATGCCCCATTGATGAAGAAGACACTC
CTGTTTGCGATCATATTGACTTTGATAAGCTTCCTCCCTATGCAAGCTCGCCCAAGGAAGCCGACATAATTGCCTATCGGCTCATTCAGCTATCGTCATC
CTGGACACCGGAGCTCTCGACATACTTGGTAGGGAAGATATTGGAATTCAACCCTCAGTCGAATAAGATCAAGCTGGTTGCAGTTCCAAAATACTCTTTG
ATCCCTCAGAACAATGAAGAAGACGACGAAACACTGCCAGAAACATGTGCGTTACAGGACGATGGCTCTCTTGAGATGGAATTTTCGTCACTTCTGGAAG
TCCGCACTGTGAAATGTAGCGGCAGCACGAATCGGGCATTGTCAGCTACTGCTGCTGGAGTCGTCGTGACCTCTGCAAAATCTCCGGATACGCCTACAAA
GGCCCCGATCAAACATTGCACTACTGATGCAGTAAACTCCTGGGATGAAATCAGCCAAGCATTGAGTGCAAAGAAAGCTGAATTGTCACAGGGGCAGAGC
TGGAATAAACCTGAGAAGAATTCAGGCGGAAACCAAAAGACTGTGAAGCCCTGGAGAGGCAGTGCTTTAGGTCCAACAATGGCTCTATTAAGAGCACAGA
ACGGAATTTGA
AA sequence
>Lus10036876 pacid=23171137 polypeptide=Lus10036876 locus=Lus10036876.g ID=Lus10036876.BGIv1.0 annot-version=v1.0
METVRLRLVFEKALAESLKKKTGGLKRFWVLLKPQHKTIYDLSRYLLDVFDLHNACPEGLLLSMEGFYLPPFESSCVLKDRDIVRVKSKTNSGMLELVAG
DGGGVKFLANEEFEKEAGGYESDDPEEEDSKLEDAMLHVEETPEMKKVSKKRKASEELGSSKKKKKKKKKEIASSAEKCAAKVSKTGDEGTSKAKKSSGP
NQCSDDHVDASCSPSGDKKVPSRSARRKKAKRQWLKEIKRAEKEKEEKHLSAIPNGKASQKKNHKATPHLVEKTEKHSPVTPNEKASKKKKPKTMKEPVE
KNMHTSVEEVPDKGNEKVQVDDDEQPDQNSDKDDNEIVPIVIRPGHIRFEPLEKVSVPGSADQTVQHNQTLVDTSQWNGMSKKKGQKWGKQNSESWKWNE
NGNSVHKPSETWKENSNSCQKPSETCPIDEEDTPVCDHIDFDKLPPYASSPKEADIIAYRLIQLSSSWTPELSTYLVGKILEFNPQSNKIKLVAVPKYSL
IPQNNEEDDETLPETCALQDDGSLEMEFSSLLEVRTVKCSGSTNRALSATAAGVVVTSAKSPDTPTKAPIKHCTTDAVNSWDEISQALSAKKAELSQGQS
WNKPEKNSGGNQKTVKPWRGSALGPTMALLRAQNGI

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G13030 sphere organelles protein-rela... Lus10036876
[exp]
0 1
AT1G06220 GFA1, CLO, MEE5 MATERNAL EFFECT EMBRYO ARREST ... Lus10043478
[exp]
1.0 0.9537
AT1G13030 sphere organelles protein-rela... Lus10006228
[exp]
1.4 0.9377
AT4G34860 A/N-InvB alkaline/neutral invertase B, ... Lus10026284
[exp]
2.2 0.9183
AT4G21430 B160 Zinc finger, RING-type;Transcr... Lus10020084
[exp]
3.5 0.9265
AT2G19640 SDG39, ASHR2 SET DOMAIN PROTEIN 39, ASH1-re... Lus10026687
[exp]
3.5 0.9060
AT5G58930 Protein of unknown function (D... Lus10018206
[exp]
5.7 0.9254
AT3G55280 RPL23A2, RPL23A... RIBOSOMAL PROTEIN L23A2, ribos... Lus10040316
[exp]
9.2 0.8970
AT5G52890 AT hook motif-containing prote... Lus10001140
[exp]
9.8 0.9161
AT1G64600 methyltransferases;copper ion ... Lus10017309
[exp]
10.5 0.8780
AT1G75640 Leucine-rich receptor-like pro... Lus10033924
[exp]
10.6 0.9170

Lus10036876 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.