Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24740 662 / 0 AME1, AFC2 FUS3-complementing gene 2 (.1.2) AT3G53570 598 / 0 AME2, AFC1 FUS3-complementing gene 1 (.1.2.3.4) AT4G32660 504 / 7e-179 AME3 Protein kinase superfamily protein (.1.2.3) AT5G35980 172 / 6e-47 YAK1 yeast YAK1-related gene 1 (.1.2) AT3G17750 166 / 2e-44 Protein kinase superfamily protein (.1) AT1G73450 165 / 5e-44 Protein kinase superfamily protein (.1) AT1G73460 165 / 5e-44 Protein kinase superfamily protein (.1) AT4G35500 154 / 6e-42 Protein kinase superfamily protein (.1.2) AT3G53640 156 / 1e-41 Protein kinase superfamily protein (.1) AT2G40120 154 / 3e-41 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043309 [exp] 651 / 0 AT4G24740 730 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10019458 [exp] 650 / 0 AT4G24740 729 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10024431 [exp] 610 / 0 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Lus10025301 [exp] 607 / 0 AT3G53570 726 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Lus10006230 [exp] 337 / 4e-115 AT4G24740 276 / 8e-93 FUS3-complementing gene 2 (.1.2) Lus10027636 [exp] 182 / 1e-55 AT4G24740 187 / 6e-59 FUS3-complementing gene 2 (.1.2) Lus10009542 [exp] 172 / 2e-46 AT5G35980 1147 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10020366 [exp] 171 / 2e-46 AT5G35980 1159 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10031902 [exp] 169 / 2e-45 AT1G73450 1318 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G049100 [exp] 729 / 0 AT4G24740 642 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.015G085700 [exp] 676 / 0 AT4G24740 747 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.012G089700 [exp] 664 / 0 AT4G24740 744 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.016G079900 [exp] 622 / 0 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Potri.006G213400 [exp] 603 / 0 AT3G53570 720 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Potri.006G244400 [exp] 543 / 0 AT4G32660 634 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.019G043400 [exp] 177 / 2e-48 AT5G35980 1088 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.013G075300 [exp] 176 / 4e-48 AT5G35980 1134 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.012G039700 [exp] 170 / 6e-46 AT1G73460 1343 / 0.0 Protein kinase superfamily protein (.1) Potri.015G033400 [exp] 168 / 4e-45 AT1G73460 1356 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10036878 pacid=23170983 polypeptide=Lus10036878 locus=Lus10036878.g ID=Lus10036878.BGIv1.0 annot-version=v1.0 ATGGAGATGAACTACGTCGCCGATTTCCCTCACAATCACATCGATCGTCGTCCCAGAAAGAGACCTAGGTTTGCTTGGGATTTCCCTCAAGCTCAGCCTA AGGTTCAGTCAGGGTTTTATTATGGACAAGATGTTGGAAACGGGACGAGTACGGGACCTTCAAGAGTACCCACAGATCATTCCGGTTTATATTTAAAGGG AGCGTCTCAAAGAGGCTCCCCTCCATGGCGAGTCGATGACAAAGATGGACATTATATGTTTGCTCTTGGAGAGAATCTAACAACTCGATATAAGATCCAT AGAAAAATTGGCGAAGGAACCTTTGGTCAGGTTTTGGAATGCTGGGATAGAGAAACAAGAGAAATGGTGGCCATAAAAGTTGTGCGAAGTATTAAGAAAT ACAGGGAGGCAGCAATGTCTGAAATTGATGTGCTCCAGCTCCTTGGAAAGTATGATAGAAACGGTAGCCGTTGTGTTCAAATACGGAACTGGTTTGACTA CCGGAACCACATATGCATTGTCTTTGAGATGCTTGGACCAAGCTTATACGATTTTCTTCGAAAAAATAGTTATCGACCATTTCCGGTAGATCTTGTCCGT GAGCTTGGAAGACAACTCTTGGAATCTGTAGCATTTATGCATGACTTGCGTCTTATTCATACAGACCTGAAGCCAGAAAACATACTCTTTGTTTCTCCAG ATTATGTGAAAATACCCGACTATAAGATTCCAGCACATTCATTTAGTGAGGCCGCCTGTTTCAAGAGGCTGCCGAAGTCAAGTGCCATCAAGGTCATCGA TTTCGGAAGCACAGCTGATGGCCGTAAACATCACAACTACATTGTTTCCACCAGACATTACCGTGCACCCGAAGTTATCCTGGGTCTTGGATGGAGTTAC TCATGCGACCTATGGAGCGTCGGCTGTATCTTGGTCGAACTATGCACAGGAGGAGCATTGTTCCAGACGCATGATAACTTAGAGCATCTAGCCATGATGG AACGGGTTCTCGGCCCAATACCTCAACAGATGCTGAAAAGAGCCGATCGACACGCGGAGAAGTACGTGAGAAGGGGTAGATTGGACTGGCCAGACAATGC AACCTCTCGTGATAGCATCAAGGCCGTCATGAAGCTGCCTCGTCTCCAGAACCTGGTAATGCAGCATGTTGATCACTCTGCCGGACAAATCATCGATCTA TTGCAAGGTCTCCTTCGCTACGATCCTTCCATCAGATTAACTGCCGATGAGGCCCTCCGGCATCCTTTCTTCTCCAGGGATCCTTACAGAAGAGTTTGA
AA sequence Show only first row Show all	>Lus10036878 pacid=23170983 polypeptide=Lus10036878 locus=Lus10036878.g ID=Lus10036878.BGIv1.0 annot-version=v1.0 MEMNYVADFPHNHIDRRPRKRPRFAWDFPQAQPKVQSGFYYGQDVGNGTSTGPSRVPTDHSGLYLKGASQRGSPPWRVDDKDGHYMFALGENLTTRYKIH RKIGEGTFGQVLECWDRETREMVAIKVVRSIKKYREAAMSEIDVLQLLGKYDRNGSRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNSYRPFPVDLVR ELGRQLLESVAFMHDLRLIHTDLKPENILFVSPDYVKIPDYKIPAHSFSEAACFKRLPKSSAIKVIDFGSTADGRKHHNYIVSTRHYRAPEVILGLGWSY SCDLWSVGCILVELCTGGALFQTHDNLEHLAMMERVLGPIPQQMLKRADRHAEKYVRRGRLDWPDNATSRDSIKAVMKLPRLQNLVMQHVDHSAGQIIDL LQGLLRYDPSIRLTADEALRHPFFSRDPYRRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10036878 [exp]	0	1
AT3G19770		ATVPS9A	ARABIDOPSIS THALIANA VACUOLAR ...		Lus10035376 [exp]	1.4	0.9293
AT3G20250		APUM5	pumilio 5 (.1)		Lus10033353 [exp]	4.5	0.9376
AT4G02715			unknown protein		Lus10006911 [exp]	6.3	0.9160
AT1G60995			unknown protein		Lus10014638 [exp]	8.1	0.9223
AT2G26000		BRIZ2	BRAP2 RING ZnF UBP domain-cont...		Lus10035023 [exp]	8.8	0.9261
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10035835 [exp]	8.9	0.9256
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Lus10018963 [exp]	9.5	0.9087
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10003567 [exp]	10.8	0.9247
AT1G18470			Transmembrane Fragile-X-F-asso...		Lus10032471 [exp]	11.5	0.9254
AT1G32340		NHL8	NDR1/HIN1-like 8 (.1)		Lus10000908 [exp]	15.7	0.9050

Compare expression of checked genes

Lus10036878 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.