Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01650 548 / 0 RGLG1 RING domain ligase1 (.1) AT5G14420 541 / 0 RGLG2 RING domain ligase2 (.1.2.3.4) AT1G67800 522 / 0 Copine (Calcium-dependent phospholipid-binding protein) family AT5G63970 403 / 2e-138 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2) AT1G79380 394 / 3e-134 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1) AT5G07300 93 / 8e-20 BON2 BONZAI 2, Calcium-dependent phospholipid-binding Copine family protein (.1) AT1G08860 91 / 2e-19 BON3 BONZAI 3, Calcium-dependent phospholipid-binding Copine family protein (.1) AT5G61900 91 / 4e-19 CPN1, BON1 COPINE 1, BONZAI 1, Calcium-dependent phospholipid-binding Copine family protein (.1.3) AT5G61910 91 / 7e-19 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006231 [exp] 644 / 0 AT3G01650 514 / 0.0 RING domain ligase1 (.1) Lus10011405 [exp] 603 / 0 AT5G14420 566 / 0.0 RING domain ligase2 (.1.2.3.4) Lus10006463 [exp] 566 / 0 AT3G01650 547 / 0.0 RING domain ligase1 (.1) Lus10000144 [exp] 556 / 0 AT5G14420 384 / 2e-132 RING domain ligase2 (.1.2.3.4) Lus10022294 [exp] 523 / 0 AT3G01650 608 / 0.0 RING domain ligase1 (.1) Lus10014587 [exp] 504 / 2e-177 AT3G01650 517 / 0.0 RING domain ligase1 (.1) Lus10032097 [exp] 501 / 1e-175 AT3G01650 514 / 0.0 RING domain ligase1 (.1) Lus10033043 [exp] 489 / 5e-171 AT3G01650 492 / 4e-172 RING domain ligase1 (.1) Lus10020885 [exp] 403 / 2e-137 AT5G63970 503 / 6e-179 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G183600 [exp] 560 / 0 AT5G14420 571 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.010G049600 [exp] 559 / 0 AT5G14420 580 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.001G342200 [exp] 557 / 0 AT5G14420 572 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.012G090100 [exp] 535 / 0 AT5G14420 575 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.006G002600 [exp] 483 / 5e-169 AT5G14420 521 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.016G003000 [exp] 474 / 1e-165 AT5G14420 500 / 2e-176 RING domain ligase2 (.1.2.3.4) Potri.010G174800 [exp] 448 / 6e-155 AT1G79380 535 / 0.0 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1) Potri.005G065700 [exp] 425 / 2e-146 AT5G63970 551 / 0.0 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2) Potri.008G081300 [exp] 421 / 5e-145 AT1G79380 518 / 0.0 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1) Potri.007G103700 [exp] 389 / 5e-133 AT5G63970 524 / 0.0 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0128 [flax] [poplar] vWA-like PF07002 [flax] [poplar] Copine Copine
Representative CDS sequence Show only first row Show all	>Lus10036879 pacid=23171278 polypeptide=Lus10036879 locus=Lus10036879.g ID=Lus10036879.BGIv1.0 annot-version=v1.0 ATGGGAGGAAGAAGTTCGAAGGAGGTGCCTGATAATACCAGGAGGGATTTTGCTTCATACGATTCGTTCAATTCCCAGTACCCGCCGCCGTATCAGTATC CTTCTTCTCCGCAGCAGCCGTACTACGCGCCGCCACAGCAGAACCATGCGCCTCCTCCTGCTGCTCCGCAGCAGGTGCAGAAGAGCCTGGATAGGAAGTA TTCCAGGATAGCTGACGATTACAAGACCTTAGATCAGGTGACTGCAGCACTTGGTCAAGCTGGATTGGAATCTTCTAATCTTATAGTTGGCATTGATTTC ACTAAGAGCAATGAATGGACAGGTGCAAGGTCATTCAACCACAAGAGTTTGCATCACATTAGCAACACTCCGAACCCTTACGAGCAAGCAATATCTATAA TTGGAAGGACATTGTCTGCATTTGATGAAGACAATATGATTCCTTGCTACGGCTTTGGAGATGCTTCCACACATGACCAAGATGTATTCAGCTTCTATCC GGAAGAGAGATTCTGCCATGGTTTTGAGGAGGTGCTGGCACGATACAGAGAAATCGTTCCTCAGCTTCGTCTTGCTGGGCCAACATCCTTTGCTCCGATT GTCGAAATGGGGATCAGCATTGTTGAGCAGAGCGGTGGCCAGTACCATGTTCTAGTCATAATTGCTGATGGTCAGGTTACAAGAAGCGTCGATACAAATC ACGGTCAGCTGAGTCCTCAAGAGCAGAAGACTATCGATGCAATTGTGAAAGCGAGTGAATACCCTTTGTCAATCATCTTAGTTGGAGTCGGTGATGGACC ATGGGATATGATGAGAGAGTTCGACGACAACCTCCCTGCCCGAGCCTTTGACAACTTCCAGTTTGTGAATTTCACTGATATCATGGCCAAGAATGTCAAC CAGACGAGGAAAGAAACAGAATTTGCACTTTCTGCACTGATGGAAATCCCTGCTCAATACAAAGCGACTCTTGAGCTTGGTTTATTAGGACGTCGAAAAG GAAATGGTGCTGAGAGGATAGCTCTACCTCCACCAATGTATGGTGCATCTTCCCAAGGCAGCTTTGGTGCAAAGAACTTCCGATCAACGAGCTTCCAACA GCGTATGCCTTCTCCTTCGGGGTACAGTTCTCCAGCACCCAGCTACAGTACACAAGCTTCCACACCGGTCACCTCAGCCCCATATTCCATGACTGATGAT AACAAGCTTTGTCCCATTTGTCTTTCAAATCCCAAGGACATGGCCTTTGGCTGCGGCCATCAGGTATGCTACCTACCACCTTCCCTTGGTTATAGCAACT CACTCTACAGTCTATCCAATTCGAACACCAAGTTATATTATCTTTCTGACACTCGAATCTGTCTATGTTGCAGACTTGCTGTGAATGTGGAGAAGACCTT CAATCATGTCCCATTTGCCGGAGCTCTATACAGACCAGGATCAGGCTGTACGGATAGGGCTGTCATGAACGAAAGTGAGGACCAATAG
AA sequence Show only first row Show all	>Lus10036879 pacid=23171278 polypeptide=Lus10036879 locus=Lus10036879.g ID=Lus10036879.BGIv1.0 annot-version=v1.0 MGGRSSKEVPDNTRRDFASYDSFNSQYPPPYQYPSSPQQPYYAPPQQNHAPPPAAPQQVQKSLDRKYSRIADDYKTLDQVTAALGQAGLESSNLIVGIDF TKSNEWTGARSFNHKSLHHISNTPNPYEQAISIIGRTLSAFDEDNMIPCYGFGDASTHDQDVFSFYPEERFCHGFEEVLARYREIVPQLRLAGPTSFAPI VEMGISIVEQSGGQYHVLVIIADGQVTRSVDTNHGQLSPQEQKTIDAIVKASEYPLSIILVGVGDGPWDMMREFDDNLPARAFDNFQFVNFTDIMAKNVN QTRKETEFALSALMEIPAQYKATLELGLLGRRKGNGAERIALPPPMYGASSQGSFGAKNFRSTSFQQRMPSPSGYSSPAPSYSTQASTPVTSAPYSMTDD NKLCPICLSNPKDMAFGCGHQVCYLPPSLGYSNSLYSLSNSNTKLYYLSDTRICLCCRLAVNVEKTFNHVPFAGALYRPGSGCTDRAVMNESEDQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10036879 [exp]	0	1
AT2G18890			Protein kinase superfamily pro...		Lus10025468 [exp]	1.4	0.9694
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Lus10000144 [exp]	1.4	0.9663
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10006231 [exp]	3.3	0.9398
AT3G11430		ATGPAT5, GPAT5	glycerol-3-phosphate acyltrans...		Lus10004711 [exp]	4.9	0.9379
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10027638 [exp]	6.0	0.9437
AT4G15093			catalytic LigB subunit of arom...		Lus10034361 [exp]	12.0	0.9613
AT1G72310		ATL3	RING/U-box superfamily protein...		Lus10016427 [exp]	16.9	0.9503
AT1G50480		THFS	10-formyltetrahydrofolate synt...		Lus10013741 [exp]	21.4	0.9460
AT5G65380			MATE efflux family protein (.1...		Lus10012741 [exp]	22.3	0.9429
AT1G06840			Leucine-rich repeat protein ki...		Lus10019114 [exp]	26.6	0.9401

Compare expression of checked genes

Lus10036879 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.