Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24530 391 / 7e-134 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24130 300 / 3e-98 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50120 270 / 6e-87 Transducin/WD40 repeat-like superfamily protein (.1) AT2G26490 228 / 7e-70 Transducin/WD40 repeat-like superfamily protein (.1) AT3G50390 225 / 1e-68 Transducin/WD40 repeat-like superfamily protein (.1) AT1G49450 222 / 2e-67 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18950 220 / 1e-66 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 209 / 4e-64 Transducin/WD40 repeat-like superfamily protein (.1) AT3G51930 204 / 4e-61 Transducin/WD40 repeat-like superfamily protein (.1) AT4G34380 203 / 4e-60 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006460 [exp] 448 / 2e-156 AT1G24530 414 / 3e-143 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011402 [exp] 434 / 5e-151 AT1G24530 406 / 3e-140 Transducin/WD40 repeat-like superfamily protein (.1) Lus10034117 [exp] 281 / 5e-91 AT5G50120 391 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1) Lus10043466 [exp] 280 / 3e-89 AT5G50120 399 / 3e-136 Transducin/WD40 repeat-like superfamily protein (.1) Lus10029206 [exp] 258 / 3e-81 AT1G24130 353 / 5e-119 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016289 [exp] 230 / 6e-71 AT2G26490 597 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011655 [exp] 228 / 3e-70 AT2G26490 604 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032868 [exp] 223 / 3e-68 AT2G26490 580 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024180 [exp] 216 / 3e-65 AT3G51930 494 / 2e-174 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G050900 [exp] 422 / 5e-146 AT1G24530 483 / 5e-170 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G070900 [exp] 298 / 1e-97 AT5G50120 398 / 2e-137 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G076000 [exp] 290 / 1e-94 AT5G50120 417 / 5e-145 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G109500 [exp] 236 / 5e-73 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G130400 [exp] 224 / 4e-68 AT2G26490 632 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G038400 [exp] 223 / 8e-68 AT2G26490 631 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G148400 [exp] 221 / 2e-67 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G131100 [exp] 223 / 3e-67 AT3G50390 535 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G035100 [exp] 218 / 4e-66 AT3G50390 514 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G022900 [exp] 208 / 7e-63 AT3G51930 523 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10036881 pacid=23171102 polypeptide=Lus10036881 locus=Lus10036881.g ID=Lus10036881.BGIv1.0 annot-version=v1.0 ATGAGATTTCAACCATTTCTCACCGGCGGCTGCTCCTCCGCAACATCCACCGCCGTCTCCACCAATACCGAGTCCCTCTCCACCTCCACATCCGACTTTT CATCCTCCTCTTCCTCCGCCTCCACAATCAGCCTCCATAGCAACCTCTCCCTCCAAACTCACCCTTCCCTCCCTTCCCTCCAACAATCTCCCGCCAAGTC CTCCGCCTCTTCCGCCTCCGTCGCCACCGCCATCCTCTGCTCTGACACTCTCCGAACCGCCCACCCAATCACCAGCCTCTCCCTCCGCGGTAACCTCCTC TACGCCACCTCCGGCCACCAAATCACCGTATACGACCGCTCCACCGGCACAATCCTCGAATCGTTCAATGCCGGGTCCGGATCCGGATCCATGAAGGCCG TCCTCTTCTCCTCCGACGGAAAACTCTTCTCCGGTCACCAGGACTCCCAGATCCGCGCCTGGAAAGTCCCAGCCTCGAACCGCCACCACAAACTCATCGC CGCCCTCCCGACGGTCTCCGACCGCCTCCGCCACTTCGCCTTCCCGAACAGCTACGTCTCCATCCGCCGCCACAAAAAGATCCTCAGAATCCAGCACGCC GACGCCGTCTCCGCCCTCGCCGTCGGCGAGAGCACCACCGGAGGGTTACTCTACTCCGTCTCATGGGACCGGAGCTTGAAGATCTGGAGCTCCTCCACCC TCCGCTGCCTCGAATCCATCACCAAGGCCCACGACGACGCCGTCAACGCCGTCACGGTCTCCACTGACGGAAACGTCTACACCGGCTCCGCAGACCGTAG GATCCGGGTCTGGGCCAAGCCGACCCACCACCACAACAAAGTCAATCGACATGCCCTGATAGCCACGCTGGAGAAACACAAGTCAGCAGTCAACGCGTTG ACTCTGAGCGAAGACGGGTCGGCTCTTTTCTCCGGGTCGTGCGATCGGTCGATTCTGGTATGGGAAAAGGAAGACAGCGCGAATCACATGGCGATCACCG GAACTTTGAGGGGCCACCGAGGTGCGGTGTTGTGTTTGATCAACGTCGGGGATTTGCTGATGAGCGGGTCGGGTGATCGGACTGTGAGGATTTGGCGGAA GGGAAGCATTGACGGGAAGTATGGTTGTTTGGCGGTTCTGGAAGGGCACGAGAAGGCTGTTAAGTCGTTGGTTGCCGAGAAGGGTGAAAACGGCGTCGTT TCAGTGTATAGTGGGAGTTTGGATGGGGAGATTAAGGCGTGGAGAGTCGAGATTGGGAAAAATTGTGACGGAAGGATCAATATGATCTGA
AA sequence Show only first row Show all	>Lus10036881 pacid=23171102 polypeptide=Lus10036881 locus=Lus10036881.g ID=Lus10036881.BGIv1.0 annot-version=v1.0 MRFQPFLTGGCSSATSTAVSTNTESLSTSTSDFSSSSSSASTISLHSNLSLQTHPSLPSLQQSPAKSSASSASVATAILCSDTLRTAHPITSLSLRGNLL YATSGHQITVYDRSTGTILESFNAGSGSGSMKAVLFSSDGKLFSGHQDSQIRAWKVPASNRHHKLIAALPTVSDRLRHFAFPNSYVSIRRHKKILRIQHA DAVSALAVGESTTGGLLYSVSWDRSLKIWSSSTLRCLESITKAHDDAVNAVTVSTDGNVYTGSADRRIRVWAKPTHHHNKVNRHALIATLEKHKSAVNAL TLSEDGSALFSGSCDRSILVWEKEDSANHMAITGTLRGHRGAVLCLINVGDLLMSGSGDRTVRIWRKGSIDGKYGCLAVLEGHEKAVKSLVAEKGENGVV SVYSGSLDGEIKAWRVEIGKNCDGRINMI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24530			Transducin/WD40 repeat-like su...		Lus10036881 [exp]	0	1
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10038538 [exp]	1.0	0.9826
AT3G53250			SAUR-like auxin-responsive pro...		Lus10009219 [exp]	2.2	0.9646
AT1G72890			Disease resistance protein (TI...		Lus10042020 [exp]	2.8	0.9672
AT2G44990		MAX3, CCD7, ATC...	carotenoid cleavage dioxygenas...		Lus10021241 [exp]	3.0	0.9668
AT5G51970			GroES-like zinc-binding alcoho...		Lus10027409 [exp]	3.3	0.9520
AT1G31910			GHMP kinase family protein (.1...		Lus10012122 [exp]	4.2	0.9548
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10001869 [exp]	4.9	0.9623
AT5G17010			Major facilitator superfamily ...		Lus10009573 [exp]	5.3	0.9509
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10034374 [exp]	6.3	0.9462
AT3G60870	AT-hook	AHL18	AT-hook motif nuclear-localize...		Lus10009301 [exp]	6.6	0.9653

Compare expression of checked genes

Lus10036881 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.