Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17890 558 / 0 GER2 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G73250 553 / 0 GER1, ATFX "GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1", ACTIVATING TRANSCRIPTION FACTOR 5, GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1 (.1) AT5G28840 89 / 7e-20 GME "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) AT3G14790 72 / 8e-14 ATRHM3, RHM3 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3, rhamnose biosynthesis 3 (.1) AT1G78570 69 / 2e-12 ATRHM1, RHM1, ROL1 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) AT1G53500 64 / 4e-11 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1) AT1G64440 62 / 1e-10 REB1, RHD1, UGE4 UDP-GLUCOSE 4-EPIMERASE, ROOT HAIR DEFECTIVE 1, ROOT EPIDERMAL BULGER1, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G59290 62 / 2e-10 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2) AT3G53520 61 / 5e-10 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) AT3G46440 60 / 5e-10 UXS5 UDP-XYL synthase 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037102 [exp] 646 / 0 AT1G17890 565 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10015915 [exp] 87 / 4e-19 AT5G28840 726 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Lus10020247 [exp] 87 / 8e-19 AT5G28840 719 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Lus10009174 [exp] 86 / 1e-18 AT5G28840 724 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Lus10001777 [exp] 86 / 1e-18 AT5G28840 724 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Lus10010942 [exp] 68 / 3e-12 AT1G78570 1130 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10023074 [exp] 67 / 6e-12 AT4G10960 585 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10020776 [exp] 64 / 5e-11 AT1G78570 964 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10005450 [exp] 62 / 1e-10 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G101700 [exp] 595 / 0 AT1G17890 549 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.006G179100 [exp] 593 / 0 AT1G17890 565 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.005G053000 [exp] 87 / 6e-19 AT5G28840 720 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Potri.013G040600 [exp] 86 / 2e-18 AT5G28840 723 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Potri.006G272700 [exp] 69 / 2e-12 AT1G78570 1078 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.011G103700 [exp] 67 / 5e-12 AT1G78570 1211 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.001G383500 [exp] 67 / 6e-12 AT1G78570 1190 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.016G080500 [exp] 64 / 3e-11 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.001G090700 [exp] 62 / 1e-10 AT4G10960 607 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Potri.008G053100 [exp] 61 / 2e-10 AT2G28760 623 / 0.0 UDP-XYL synthase 6 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10036882 pacid=23171194 polypeptide=Lus10036882 locus=Lus10036882.g ID=Lus10036882.BGIv1.0 annot-version=v1.0 ATGACGTGGCGGTGGGAAAATAACAAAGCTATAGTATTTGAAAATGCCAAGTGGACAGATGGTTCTGCATTCTTAGCTGATAAAGCAGCCAAGATCTTTG TGGCGGGACATCGTGGTCTCGTGGGATCCGCCATTGTCCGTAAACTTCAGGCTCTAGGGTTTTCCAACCTGCTGCTCCGCACCCATGCTGAGCTCGATCT CACCCGCCAGTCCGAAGTCGAATCGTTCTTCGCTTCCGAGAAGCCTGAGTTTGTGATCCTGGCAGCTGCGAAAGTTGGTGGCATCCATGCCAACAACACT TACCCTGCTGATTTCATCGGCATCAATCTCCAGATCCAGACCAACGTCATCGATTCAGCTTACAAACACGGCACCAAAAAGCTGCTCTTTCTCGGGTCGT CCTGCATCTACCCTAAACTGGCTCCTCAGCCGATCCTGGAGGAGGCACTGCTCACCGGTCCTTTAGAGCCAACAAACGAGTGGTACGCGGTGGCGAAGAT CTCCGGGATCAAGATGTGCCAAGCGTACAGGATTCAGTACACGTGGGACGCCATCTCCGGGATGCCTACGAACTTGTACGGTCCGAACGACAATTTCCAC CCGGAGAACTCGCACGTCCTTCCTGCCCTAATGAGGAGGTTCCACGAGGCGAAGGTCAATAATGCCAAGGAAGTGGTAGTTTGGGGCACGGGAAGCCCGT TGAGGGAGTTTCTTCACGTCGATGATCTGGCAGATGCTACGGTGTTTATGATGGAAAAGTACAGCGGGCTGGAGCATTTGAATGTTGGGAGTGGGAAGGA GGTGACGATTAAGGAGTTGGCTGAGTTGGTGAAAGAAGTTGTTGGGTTCGAAGGAGATCTCGTTTGGGACTCGTCGAAGCCTGATGGAACTCCAAGGAAG CTCATGGATAGCTCGAAGCTGCTTGGAATGGGTTGGACCCCTAAGGTTTCGCTTCGGGAAGGACTGGTTGACACCTACAAGTGGTATGTGGAGAATGTGA CCAAGCAATAA
AA sequence Show only first row Show all	>Lus10036882 pacid=23171194 polypeptide=Lus10036882 locus=Lus10036882.g ID=Lus10036882.BGIv1.0 annot-version=v1.0 MTWRWENNKAIVFENAKWTDGSAFLADKAAKIFVAGHRGLVGSAIVRKLQALGFSNLLLRTHAELDLTRQSEVESFFASEKPEFVILAAAKVGGIHANNT YPADFIGINLQIQTNVIDSAYKHGTKKLLFLGSSCIYPKLAPQPILEEALLTGPLEPTNEWYAVAKISGIKMCQAYRIQYTWDAISGMPTNLYGPNDNFH PENSHVLPALMRRFHEAKVNNAKEVVVWGTGSPLREFLHVDDLADATVFMMEKYSGLEHLNVGSGKEVTIKELAELVKEVVGFEGDLVWDSSKPDGTPRK LMDSSKLLGMGWTPKVSLREGLVDTYKWYVENVTKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17890		GER2	NAD(P)-binding Rossmann-fold s...		Lus10036882 [exp]	0	1
AT5G44670			Domain of unknown function (DU...		Lus10038387 [exp]	3.3	0.9219
AT3G20300			Protein of unknown function (D...		Lus10002334 [exp]	4.6	0.8732
AT3G27470			Protein of unknown function (D...		Lus10032090 [exp]	5.7	0.9111
AT1G20550			O-fucosyltransferase family pr...		Lus10023948 [exp]	6.1	0.8292
AT4G19370			Protein of unknown function (D...		Lus10035672 [exp]	7.1	0.8773
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10037377 [exp]	7.7	0.9013
AT5G44670			Domain of unknown function (DU...		Lus10036247 [exp]	8.9	0.8982
AT3G56930			DHHC-type zinc finger family p...		Lus10030997 [exp]	9.0	0.7859
AT3G27330			zinc finger (C3HC4-type RING f...		Lus10032118 [exp]	9.2	0.8739
AT1G07710			Ankyrin repeat family protein ...		Lus10005432 [exp]	11.1	0.8235

Compare expression of checked genes

Lus10036882 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.