Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13860 825 / 0 QUL1 QUASIMODO2 LIKE 1 (.1.2.3.4) AT2G03480 822 / 0 QUL2 QUASIMODO2 LIKE 2 (.1.2) AT1G78240 646 / 0 OSU1, TSD2, QUA2 TUMOROUS SHOOT DEVELOPMENT 2, QUASIMODO2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G06050 325 / 4e-102 Putative methyltransferase family protein (.1) AT3G23300 322 / 9e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G39750 318 / 1e-99 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G14360 315 / 3e-99 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G04430 310 / 2e-97 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G77260 306 / 2e-95 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G14430 304 / 4e-95 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037101 [exp] 1153 / 0 AT1G13860 892 / 0.0 QUASIMODO2 LIKE 1 (.1.2.3.4) Lus10036485 [exp] 617 / 0 AT1G78240 928 / 0.0 TUMOROUS SHOOT DEVELOPMENT 2, QUASIMODO2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10010353 [exp] 568 / 0 AT1G78240 859 / 0.0 TUMOROUS SHOOT DEVELOPMENT 2, QUASIMODO2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10001013 [exp] 325 / 2e-102 AT2G39750 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10004702 [exp] 324 / 4e-102 AT2G39750 1021 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10030155 [exp] 323 / 3e-101 AT2G39750 1049 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10038973 [exp] 318 / 2e-100 AT5G04060 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10027266 [exp] 314 / 3e-99 AT5G04060 890 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10022291 [exp] 310 / 4e-97 AT5G14430 881 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G159400 [exp] 949 / 0 AT2G03480 885 / 0.0 QUASIMODO2 LIKE 2 (.1.2) Potri.008G094800 [exp] 941 / 0 AT2G03480 873 / 0.0 QUASIMODO2 LIKE 2 (.1.2) Potri.002G098000 [exp] 659 / 0 AT1G78240 1040 / 0.0 TUMOROUS SHOOT DEVELOPMENT 2, QUASIMODO2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G163900 [exp] 658 / 0 AT1G78240 1028 / 0.0 TUMOROUS SHOOT DEVELOPMENT 2, QUASIMODO2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G059500 [exp] 325 / 1e-102 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G036800 [exp] 319 / 8e-101 AT1G04430 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G226000 [exp] 315 / 4e-99 AT1G04430 939 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.010G199300 [exp] 309 / 3e-96 AT2G39750 998 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.006G043600 [exp] 305 / 2e-95 AT3G10200 928 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G342300 [exp] 301 / 4e-94 AT5G14430 893 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10036883 pacid=23171349 polypeptide=Lus10036883 locus=Lus10036883.g ID=Lus10036883.BGIv1.0 annot-version=v1.0 ATGAGAAGCCCCTGGCTTAACAAACTATATGGTACTTTAGGCCCTAGACCGCCAGCTAGTTTGCTGCTTTTGTGTCTGGTGTGTGTGCTGGTAGTGATTG CGGTTTTGAGATCAACTTCTTCTCCCACGTTTGATGCTGTCACAATCACCCCGTTCCCGAACATCTATTCGAACTATAGGAGGTTGAAGGAGCAGGCTGC AGTTGACTATTGGGAGCTTCGGTCGTTCTCGATTTCGGCTACTAGGCAGCAAGTGCTTGACCTCTGCGCAAAAGAGAGGGAACATTTCGTGCCTTGTTAC AACGTCACTGCAAACACATTAGCCGGGTTTAAGGATGGGGAAGAGTTCGATCGACATTGTGAAACGTTCAGGGCTAGAGATCGGTGTTTGGTTCGGCCTC CAAAGGATTACAAGATTCCCTTGAGATGGCCTGCTGGCAGGGACGTGATATGGAGTGGCAATGTGAGGCTAACTAGAGACCAGTTCCTTTCTTCTGGAAG CATGACAAAGAGGTTGATGCTGTTGGAAGAGAATCAAATTGCTTTCCACTCCGAGGATGGATTGATCTTTGATGGGGTGAAAGACTACTCCCGACAAGTT GCTGAAATGATTGGGTTAGGAAGTGACATTGAGTTCCCTCAAGCCGGTGTACGAACGGTATTGGATATTGGTTGTGGGTTTGGTAGCTTTGGAGCTCATC TAGTGTCACGCAAGGTTATGCCTATATGTACGGCTGCTTATGAAGCCACTGGCAGTCAAGTTCAACTGGCCCTTGAGAGAGGTCTTCCAGCTATGATTGG GAATTTTATTTCTCGTCAATTTCCCTATCCGTCATTGTCGTTTGACATGGTTCACTGTACGCAGTGCAGTATTATCTGGGACGATAAAGATGGTATGTTC CTTATCGAAGTGGACCGGATTCTCAAGCCAGGAGGTTACTTTGTGCTAACCTCTCCAGCAAGTAAACCATCTGCAAGTTCATCTAGAACAAAGAAGAAAA GCATGGTGGCACCAATTGAAGAATTCACCGAGAAGATATGTTGGAGTCTGATGGCTCAGCAGGATGAGACTTTCATCTGGCAGAAAACTGCCGATGCCGA TTGCTATAAATCTCGTAAGTCAGCTGTTCCTCCTGTTTGCAACAAGGAGAACGATCTCCCCCCTTATTACCAGCCTCTTGTTTCGTGCATCAGCGGAACC ACCAGCCAACGCTGGATTCCCATTCAGAATCGGTCCTCCGAGAGGTTGAGCTCATCCGAGCTTCAAATTCACGGAGTTAATCCTGACGAGTTCTTCGAAG ATTCTCAGGTGTGGCGGTCAGCTCTTAGAAATTACTGGTCTTTGCTCACACCATTAATTTTCTCTGACCATCCAAAGAGGCCTGGTGATGAAGACCCTTT ACCTCCATTCAACATGCTACGAAACGTTATGGACATGAACGCTCATTATGGTGGCTTGAATGCCGCTTTTCTGGAGGAAAAGAAATCGGTTTGGGTGATG AATGTTGTGCCTGTCAGGGCCCGTAACACCCTTCCCCTCATAATCGATCGAGGCTTCGCTGGTGTTTTACATGACTGGTGTGAGCCCTTCCCGACATACC CTCGAACATACGATATGCTTCATGGATACGGTATGCTCTCTCATCTTAGTTCAGAAAGGTGCGGTATGATGGACGTACTACTCGAAATGGATCGAATTTT ACGACCTGAGGGATGGGTGGTTCTTTCGGACAGCATGGCAGCAATCGAGATGGCACGCGCACTGGCTGCGCAGATACATTGGGAAGCGAGAGTGGTTGAT CCTCAGAACGGCAGTGACCAGCGATTACTGGTTTGCCAGAAACCATTTGTCAAGAAATGA
AA sequence Show only first row Show all	>Lus10036883 pacid=23171349 polypeptide=Lus10036883 locus=Lus10036883.g ID=Lus10036883.BGIv1.0 annot-version=v1.0 MRSPWLNKLYGTLGPRPPASLLLLCLVCVLVVIAVLRSTSSPTFDAVTITPFPNIYSNYRRLKEQAAVDYWELRSFSISATRQQVLDLCAKEREHFVPCY NVTANTLAGFKDGEEFDRHCETFRARDRCLVRPPKDYKIPLRWPAGRDVIWSGNVRLTRDQFLSSGSMTKRLMLLEENQIAFHSEDGLIFDGVKDYSRQV AEMIGLGSDIEFPQAGVRTVLDIGCGFGSFGAHLVSRKVMPICTAAYEATGSQVQLALERGLPAMIGNFISRQFPYPSLSFDMVHCTQCSIIWDDKDGMF LIEVDRILKPGGYFVLTSPASKPSASSSRTKKKSMVAPIEEFTEKICWSLMAQQDETFIWQKTADADCYKSRKSAVPPVCNKENDLPPYYQPLVSCISGT TSQRWIPIQNRSSERLSSSELQIHGVNPDEFFEDSQVWRSALRNYWSLLTPLIFSDHPKRPGDEDPLPPFNMLRNVMDMNAHYGGLNAAFLEEKKSVWVM NVVPVRARNTLPLIIDRGFAGVLHDWCEPFPTYPRTYDMLHGYGMLSHLSSERCGMMDVLLEMDRILRPEGWVVLSDSMAAIEMARALAAQIHWEARVVD PQNGSDQRLLVCQKPFVKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13860		QUL1	QUASIMODO2 LIKE 1 (.1.2.3.4)		Lus10036883 [exp]	0	1
AT1G19835			Plant protein of unknown funct...		Lus10024325 [exp]	1.7	0.9519
AT1G19835			Plant protein of unknown funct...		Lus10024324 [exp]	2.4	0.9493
AT2G01970			Endomembrane protein 70 protei...		Lus10031308 [exp]	3.5	0.9482
AT1G62020			Coatomer, alpha subunit (.1)		Lus10035883 [exp]	4.0	0.9477
AT5G58970		ATUCP2	uncoupling protein 2 (.1.2)		Lus10040709 [exp]	4.2	0.9161
AT3G62110			Pectin lyase-like superfamily ...		Lus10009972 [exp]	5.7	0.9221
AT1G64650			Major facilitator superfamily ...		Lus10000337 [exp]	6.3	0.9364
AT2G01970			Endomembrane protein 70 protei...		Lus10031876 [exp]	6.3	0.9411
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10029902 [exp]	6.3	0.9319
AT5G10840			Endomembrane protein 70 protei...		Lus10026254 [exp]	8.1	0.9395

Compare expression of checked genes

Lus10036883 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.