Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26560 775 / 0 BGLU40 beta glucosidase 40 (.1) AT5G54570 619 / 0 BGLU41 beta glucosidase 41 (.1) AT3G18080 518 / 0 BGLU44 B-S glucosidase 44 (.1) AT3G18070 500 / 2e-174 BGLU43 beta glucosidase 43 (.1.2) AT2G44480 484 / 9e-168 BGLU17 beta glucosidase 17 (.1.2) AT5G36890 481 / 6e-167 BGLU42 beta glucosidase 42 (.1.2) AT5G24550 464 / 6e-160 BGLU32 beta glucosidase 32 (.1) AT1G61820 457 / 2e-157 BGLU46 beta glucosidase 46 (.1.3) AT3G60140 454 / 5e-155 BGLU30, SRG2, DIN2 SENESCENCE-RELATED GENE 2, DARK INDUCIBLE 2, BETA GLUCOSIDASE 30, Glycosyl hydrolase superfamily protein (.1) AT1G61810 449 / 3e-154 BGLU45 beta-glucosidase 45 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037098 [exp] 983 / 0 AT1G26560 785 / 0.0 beta glucosidase 40 (.1) Lus10004654 [exp] 822 / 0 AT1G26560 773 / 0.0 beta glucosidase 40 (.1) Lus10026657 [exp] 721 / 0 AT1G26570 856 / 0.0 UDP-glucose dehydrogenase 1 (.1) Lus10009218 [exp] 609 / 0 AT5G04240 993 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Lus10037988 [exp] 589 / 0 AT5G54570 741 / 0.0 beta glucosidase 41 (.1) Lus10031235 [exp] 546 / 0 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10037987 [exp] 538 / 0 AT5G54570 662 / 0.0 beta glucosidase 41 (.1) Lus10031234 [exp] 536 / 0 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10031251 [exp] 529 / 0 AT2G44450 572 / 0.0 beta glucosidase 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G094200 [exp] 770 / 0 AT1G26560 798 / 0.0 beta glucosidase 40 (.1) Potri.010G159900 [exp] 760 / 0 AT1G26560 795 / 0.0 beta glucosidase 40 (.1) Potri.001G409900 [exp] 611 / 0 AT5G54570 791 / 0.0 beta glucosidase 41 (.1) Potri.004G040700 [exp] 520 / 0 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.T085301 [exp] 511 / 1e-178 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.003G211100 [exp] 511 / 2e-178 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.012G049300 [exp] 506 / 1e-176 AT3G18080 831 / 0.0 B-S glucosidase 44 (.1) Potri.015G041300 [exp] 506 / 2e-176 AT3G18080 839 / 0.0 B-S glucosidase 44 (.1) Potri.001G227300 [exp] 499 / 5e-174 AT2G44480 585 / 0.0 beta glucosidase 17 (.1.2) Potri.001G015100 [exp] 499 / 7e-174 AT5G44640 553 / 0.0 beta glucosidase 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10036885 pacid=23171014 polypeptide=Lus10036885 locus=Lus10036885.g ID=Lus10036885.BGIv1.0 annot-version=v1.0 ATGGCTTCGACGACGTCGTCACTATTACTACTGACGTCGTTCACCTTACTTTTAACGGCGGCAACGTCGCAGAACATCTCCAGGGCCAGCTTCCCCGCCG GGTTCACCTTCGGAACTGCCTCCTCTGCTTTCCAGTACGAAGGAGCAGTGAAAACTGATGGAAGAGGGCCGAGTATATGGGACACTTACTCTCATACCTT GGGAAAAATACTTGATTTCAGCAATGCTGATGTTGCTGTAGATCAATATCATCGTTTCAATGAAGATATACAGTTGATGAAGGGCATGGGTCTGGATGCC TACAGATTCTCCATTTCCTGGACTCGGATCTATCCTGGCGGAACGGGGCAGATTAATGAGGCAGGAGTGGACCACTACAATAAAGTGATTGATGCATTGC TCGCTAACGGAATCAAACCATACGTTACATTGTACCATTGGGACCTTCCTCAGGCCTTGCACGACAAGTATACCGGATGGCTCGATCGCCAGATTATTAA GGATTTCGCGATGTATGCCGAGACATGCTTCCAGAAATTTGGGGACAGAGTAAAGCACTGGATCACATTCAACGAGCCACATACTTTTGCTGTTCAGGGC TACGATGCTGGCCTCCAAGCTCCAGGTCGTTGCTCCGTCGCTCTCCGCCTCTGGTGCAAAGGAGGGAACTCAGCCACCGAGCCGTACATGGTCGCCCACA ACACCATCCTTGCACATGCCACCACTGCCGACATCTACCGAAGAAAGTACAAGCCCATCCAAAAGGGTATCATTGGCGCTTCCTTCGACGTTATATGGTA CGAGCCCGGGTCCAACTCCCAGAACGACATTGAGGCGGCCCAACGGGCCCAGGACTTCCAGCTAGGTTGGTTCATGGACCCGCTCGTGTTGGGGGACTAC CCGAGCTCCATGAGGAGCCGGGTGGGGACGCGTCTCCCGAAGTTCTCGGACTCCGAAGTTAAAATGGTCAAAGGATTGTTGGATTTCGTCGGGATTAACC ATTACACGACATTTTACGCCAACAATGGCTCGTCTGGTATCGTGAATTTTTTGCTGAATGACACGCTCGCGGATTCTGATACCGTTGCCTTTCCGTTCAA AAATGGCAAGGCTATTGGTGAAAGGGCGAATGCGATATGGTTGTATATGGTACCACAAGGGATGCGAAGTTTGATGAATTATGTCAAGCAGAGGTACGGG AACCCTCCCGTGTACATCACCGAAAATGGTATGGATGATCCGAATAGCCCATTCATCTCGATCAAAGATGCACGAAAGGATGAGAAAAGGATCCGATACC TCAATGGTTACCTTACAAGCTTACTAGCTTCCATCAAGGAAGATGGGTGCAATGTGAAAGGGTACTTTGTGTGGTCATTGCTAGACAATTGGGAATGGTC AGCTGGCTACACTTCAAGATTTGGACTCTACTATGTTGATTTCAAGGACAATCTCAAGAGATACCCTAAGAACTCTGTTACTTGGCTCACAAACTTCTTG ACCCGTTCTGCTTAA
AA sequence Show only first row Show all	>Lus10036885 pacid=23171014 polypeptide=Lus10036885 locus=Lus10036885.g ID=Lus10036885.BGIv1.0 annot-version=v1.0 MASTTSSLLLLTSFTLLLTAATSQNISRASFPAGFTFGTASSAFQYEGAVKTDGRGPSIWDTYSHTLGKILDFSNADVAVDQYHRFNEDIQLMKGMGLDA YRFSISWTRIYPGGTGQINEAGVDHYNKVIDALLANGIKPYVTLYHWDLPQALHDKYTGWLDRQIIKDFAMYAETCFQKFGDRVKHWITFNEPHTFAVQG YDAGLQAPGRCSVALRLWCKGGNSATEPYMVAHNTILAHATTADIYRRKYKPIQKGIIGASFDVIWYEPGSNSQNDIEAAQRAQDFQLGWFMDPLVLGDY PSSMRSRVGTRLPKFSDSEVKMVKGLLDFVGINHYTTFYANNGSSGIVNFLLNDTLADSDTVAFPFKNGKAIGERANAIWLYMVPQGMRSLMNYVKQRYG NPPVYITENGMDDPNSPFISIKDARKDEKRIRYLNGYLTSLLASIKEDGCNVKGYFVWSLLDNWEWSAGYTSRFGLYYVDFKDNLKRYPKNSVTWLTNFL TRSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26560		BGLU40	beta glucosidase 40 (.1)		Lus10036885 [exp]	0	1
AT5G48540			receptor-like protein kinase-r...		Lus10025875 [exp]	3.3	0.9338
					Lus10021406 [exp]	6.0	0.9114
AT1G16130		WAKL2	wall associated kinase-like 2 ...		Lus10004504 [exp]	7.1	0.9005
AT2G15820		OTP51	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10023856 [exp]	7.9	0.8828
AT2G47190	MYB	AtMYB2	myb domain protein 2 (.1)		Lus10009996 [exp]	9.4	0.8965
					Lus10021407 [exp]	10.2	0.8946
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10030020 [exp]	11.0	0.8944
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10030596 [exp]	11.2	0.8913
AT3G47570			Leucine-rich repeat protein ki...		Lus10004388 [exp]	11.4	0.8826
AT3G60290			2-oxoglutarate (2OG) and Fe(II...		Lus10018950 [exp]	12.3	0.8910

Compare expression of checked genes

Lus10036885 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.