Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26580 202 / 2e-58 unknown protein AT1G13880 191 / 7e-55 ELM2 domain-containing protein (.1) AT2G03470 184 / 4e-52 MYB ELM2 domain-containing protein (.1.2) AT4G11400 105 / 6e-24 ARID ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) AT5G04110 91 / 3e-19 GYRB3 DNA GYRASE B3 (.1) AT2G46040 62 / 4e-10 ARID ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037097 [exp] 888 / 0 AT1G26580 249 / 4e-76 unknown protein Lus10026655 [exp] 389 / 2e-130 AT1G26580 237 / 3e-72 unknown protein Lus10004658 [exp] 382 / 5e-128 AT1G26580 243 / 1e-74 unknown protein Lus10000680 [exp] 189 / 3e-54 AT1G13880 200 / 3e-59 ELM2 domain-containing protein (.1) Lus10021636 [exp] 184 / 1e-52 AT2G03470 188 / 5e-55 ELM2 domain-containing protein (.1.2) Lus10024636 [exp] 110 / 1e-25 AT4G11400 187 / 5e-53 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10032272 [exp] 105 / 5e-25 AT4G11400 187 / 6e-55 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10036373 [exp] 94 / 5e-20 AT4G11400 249 / 8e-75 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10014762 [exp] 93 / 1e-19 AT2G46040 242 / 4e-72 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G094400 [exp] 295 / 2e-93 AT1G26580 280 / 3e-88 unknown protein Potri.010G159700 [exp] 279 / 4e-87 AT1G26580 253 / 1e-77 unknown protein Potri.004G118400 [exp] 180 / 2e-50 AT1G26580 219 / 2e-65 unknown protein Potri.017G091900 [exp] 177 / 1e-49 AT1G26580 218 / 2e-65 unknown protein Potri.001G101800 [exp] 107 / 3e-25 AT4G11400 272 / 1e-86 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.002G161100 [exp] 104 / 2e-23 AT2G46040 221 / 4e-64 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.003G129800 [exp] 104 / 2e-23 AT4G11400 319 / 7e-101 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.014G086700 [exp] 103 / 4e-23 AT2G46040 247 / 2e-73 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036888 pacid=23171193 polypeptide=Lus10036888 locus=Lus10036888.g ID=Lus10036888.BGIv1.0 annot-version=v1.0 ATGGGATATAAACGACATTTTGATGATTCAGAGTGTCAGGAGCTTCACTTTAAGCAGGCAAGGCAACAGGACTTCACCAATAGGTCGACTCAGTTTGCTG AGAACTTGTCCTGTATTAGTCCTCCCAAGAAGCCTGATTCTTCAGTTGATTGTTACAGTAACTACGGAAAACCTCTTTGGCATGAGGTATTTGAAAATGC TGTAGTGCCCAGTAATCCTACCAATGAGGACGTGTCCTTCAGAGTGGCAGCTTCCTCTTCCTTGTCTCCTGAATATTCCGAGTATAAGGGTCTGCATGAC TATACACCGTTCAAGAATTTTTGTTTGCCCTTTTACGATCGCTTCCCAAGGAAGCAAGTTCGTATTGGACCAGACCACCAAGCCAACATACCATTGTTGT GTGCCAGTGTAGAGAAAAACAAGAAGGCGATAGACTCATTAGAGCCAAAGGATTCCAATTACTGCGACGAGGATAAACTAACGGGCACATGCATCATTCC AATGCCTGATACTGAATCTGTTGCCTCCGACAGTGACCAGTTAAGATTTACGAAACCTGCTTGTGGCTGCCTAGATGAGGGCTCGTTGAGGTGTGTACGG CAGCATATAACAGAAGCTAGGTACAAGCTTAGAGAATCGTTGGGTCACGAGAAGTTTGTAAGTCTGGGGTTCAACAACATGGGAGAAGAGGTGGCATGGA GATGGAGTGAAGATGAAGAACGTCGTTTCCGCTCTGTTATTTACTCCAATCCTGTATCCTTGGGTCGGAACTTCTGGAAGCACCTCGCACAAGTGTTTGC CGCTCGATCCATGAAGGAGATTGTCAGCTACTACTTCAATGTATTCATGCTTAGGAAGCGGGCATCTCAGAACAGATCGGATGTTTTGGATGTCGATAGT GACGATGATGAATTGCATGGGATTGATGTAGGCCCCTATGAAGGTGAAGATTCGGAAGAAGAGGATGACTCTGGCATTGAATCGCCTGTTGAAGAAGAAT ACAGCCAGGTCAACCATGGAAAGGACATTGTGACCGAAGATAACGATGAGGATGATGTTGATGTTGATGACAATGATGACGACGACGATGATGATAATGG TGATGGGAATTGTGACGTTGGAAATGGTTTCTGTGATCTTAAAAGAGAAGACTCGGGAGTCGATTATATCTCAGCGCCTCCTCGTGAGAAGTCATTTAAT GGCTGTACAAATGAATCCAAGTTCAACTATGCAGATAAGAAGAGAGAAAACCATGACGAAGATCTTACCGTCCAGGACGACTCGTGTACTTCTTTCGAGT TCCAAGCTTACAAGGACGATCCATTCGACAGTGTGTACGCAAATTGTTCCACGGGTGAGGTAGACAGTTGCAGTGGCTACATGATAGATATGGTGCCCAT GTTGGACTTCCGCGACGATGAAGTTTTGTACAGACTGTACTCCAGTCCGGAAAAAGCCCTTCAGCCGGTGCTCCAAGACTACTCATGCTTGCCTCTGGAG TTGCAAGCTGAGAAGGAACTGTCTTCTTGTAAAGGTGCTAGAATCACTGATGCAATGGATCTGGTGCCGTTGATGGATTTTCATGACGAGAAAGCCTGGG ACACGATATTCCCAGGTTCGCTATAG
AA sequence Show only first row Show all	>Lus10036888 pacid=23171193 polypeptide=Lus10036888 locus=Lus10036888.g ID=Lus10036888.BGIv1.0 annot-version=v1.0 MGYKRHFDDSECQELHFKQARQQDFTNRSTQFAENLSCISPPKKPDSSVDCYSNYGKPLWHEVFENAVVPSNPTNEDVSFRVAASSSLSPEYSEYKGLHD YTPFKNFCLPFYDRFPRKQVRIGPDHQANIPLLCASVEKNKKAIDSLEPKDSNYCDEDKLTGTCIIPMPDTESVASDSDQLRFTKPACGCLDEGSLRCVR QHITEARYKLRESLGHEKFVSLGFNNMGEEVAWRWSEDEERRFRSVIYSNPVSLGRNFWKHLAQVFAARSMKEIVSYYFNVFMLRKRASQNRSDVLDVDS DDDELHGIDVGPYEGEDSEEEDDSGIESPVEEEYSQVNHGKDIVTEDNDEDDVDVDDNDDDDDDDNGDGNCDVGNGFCDLKREDSGVDYISAPPREKSFN GCTNESKFNYADKKRENHDEDLTVQDDSCTSFEFQAYKDDPFDSVYANCSTGEVDSCSGYMIDMVPMLDFRDDEVLYRLYSSPEKALQPVLQDYSCLPLE LQAEKELSSCKGARITDAMDLVPLMDFHDEKAWDTIFPGSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26580			unknown protein		Lus10036888 [exp]	0	1
AT1G26580			unknown protein		Lus10037097 [exp]	1.0	0.8362
AT1G64260			MuDR family transposase (.1)		Lus10038037 [exp]	5.5	0.8260
AT4G03000			RING/U-box superfamily protein...		Lus10021954 [exp]	6.0	0.7509
AT5G53440			unknown protein		Lus10019025 [exp]	10.6	0.7656
AT1G51580			RNA-binding KH domain-containi...		Lus10034831 [exp]	13.5	0.7846
AT1G61690			phosphoinositide binding (.1)		Lus10018391 [exp]	16.0	0.7937
AT1G09050			unknown protein		Lus10004495 [exp]	16.4	0.7738
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Lus10024723 [exp]	21.0	0.7136
AT5G06460		ATUBA2 ,UBA 2	ARABIDOPSIS THALIANA UBIQUITI...		Lus10031292 [exp]	25.0	0.7363
AT1G10170		ATNFXL1	NF-X-like 1 (.1)		Lus10034470 [exp]	25.8	0.8002

Compare expression of checked genes

Lus10036888 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.