Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26610 112 / 3e-28 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G26590 66 / 3e-12 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G26940 49 / 1e-06 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G56200 42 / 0.0002 C2H2ZnF C2H2 type zinc finger transcription factor family (.1) AT2G17180 40 / 0.001 C2H2ZnF DAZ1 DUO1-ACTIVATED ZINC FINGER 1, C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037095 [exp] 303 / 3e-101 AT1G26610 229 / 6e-70 C2H2-like zinc finger protein (.1) Lus10026654 [exp] 140 / 9e-39 AT1G26610 233 / 1e-71 C2H2-like zinc finger protein (.1) Lus10004659 [exp] 132 / 1e-35 AT1G26610 219 / 1e-66 C2H2-like zinc finger protein (.1) Lus10021637 [exp] 64 / 2e-11 AT1G02030 99 / 8e-23 C2H2-like zinc finger protein (.1) Lus10000679 [exp] 59 / 7e-10 AT2G45120 91 / 3e-20 C2H2-like zinc finger protein (.1) Lus10003463 [exp] 42 / 0.0002 AT1G26610 112 / 2e-28 C2H2-like zinc finger protein (.1) Lus10009775 [exp] 42 / 0.0003 AT1G02030 128 / 5e-33 C2H2-like zinc finger protein (.1) Lus10023932 [exp] 41 / 0.0004 AT4G35280 126 / 2e-35 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) Lus10015740 [exp] 41 / 0.0005 AT1G02030 104 / 3e-25 C2H2-like zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G159600 [exp] 157 / 8e-45 AT1G26610 298 / 6e-96 C2H2-like zinc finger protein (.1) Potri.008G094500 [exp] 145 / 3e-40 AT1G26610 223 / 3e-67 C2H2-like zinc finger protein (.1) Potri.004G118100 [exp] 61 / 3e-10 AT3G49930 80 / 9e-17 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.017G091800 [exp] 57 / 5e-09 AT5G67450 77 / 9e-16 zinc-finger protein 1 (.1) Potri.014G066200 [exp] 47 / 1e-05 AT1G02040 129 / 1e-33 C2H2-type zinc finger family protein (.1) Potri.002G143600 [exp] 45 / 3e-05 AT1G02040 124 / 1e-31 C2H2-type zinc finger family protein (.1) Potri.009G089400 [exp] 40 / 0.0007 AT3G19580 120 / 6e-33 zinc-finger protein 2 (.1.2) Potri.002G119300 [exp] 40 / 0.0007 AT1G27730 186 / 8e-59 salt tolerance zinc finger (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036889 pacid=23171302 polypeptide=Lus10036889 locus=Lus10036889.g ID=Lus10036889.BGIv1.0 annot-version=v1.0 ATGGAGGCCGCAAATCAGAAGAAGAAGTTTGTTTGCAGCTACTGCAACAAGAGGTATCCGTGTGGGAAGTCATTGGGTGGACACATTAGGATCCATTTAA AGGATTCTTCTTCATATGGGAATGAAGCTCAAGCAGCAGCTGGAGATGGATACATTCTGAGGGAGAATCCGAAGAAAACCAAGAAGTTTGATGTGGATCC AAACAAGAACAACTACCATGGTTTGCTCAAGGTTTGCAAAGAGTGTGGTAAAGGGTTTCAGTCCCTCAAGGCTTTATGTGGTCATATGGCTTGTCATTCC AGGAACTACTCCAGCTATGACTCGGATGAAGAGGAGGATTTGGTTATGGATGATGATGATGATCGTCTGTCTGATACTGAGACATCAACTCCAAGTAAGA AGAGGAGGAGATCCAAGAGAATGGTGAGGTACAAGAACATTGGTCTCTATGGGAATGGCTCTGGTGGGTCTTTGTCGTCTTCCATAGCTTCTGATTTGGA GCAAGAGCAGGAAGAGGTTGCTTTGTGCTTGATGATGCTGTCAAAGGACTCTGGTACTCTTAAAGGTTGTTTTAGGAGCTATGTTGCTGCTGCTGCTGCT GCTGATTCTTATGATGATAACAACTCTGTTGTTCTGGAGGCAAAGATGAGAATCAAGATGAAGAATAGTATTTACAGCTCAAGTTGCTATGATGGTGGTG ATGATGATGATGATAAAGACGGAACTCTGATTCTTCTGGCTACTTCAATTATGGTCCCAAGAAGAGTGAACTATCAGATGTGTCTACTGATGAAGTAG
AA sequence Show only first row Show all	>Lus10036889 pacid=23171302 polypeptide=Lus10036889 locus=Lus10036889.g ID=Lus10036889.BGIv1.0 annot-version=v1.0 MEAANQKKKFVCSYCNKRYPCGKSLGGHIRIHLKDSSSYGNEAQAAAGDGYILRENPKKTKKFDVDPNKNNYHGLLKVCKECGKGFQSLKALCGHMACHS RNYSSYDSDEEEDLVMDDDDDRLSDTETSTPSKKRRRSKRMVRYKNIGLYGNGSGGSLSSSIASDLEQEQEEVALCLMMLSKDSGTLKGCFRSYVAAAAA ADSYDDNNSVVLEAKMRIKMKNSIYSSSCYDGGDDDDDKDGTLILLATSIMVPRRVNYQMCLLMK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10036889 [exp]	0	1
					Lus10002965 [exp]	5.7	0.6405
AT4G14200			Pentatricopeptide repeat (PPR)...		Lus10041255 [exp]	6.2	0.7370
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10038284 [exp]	6.6	0.7067
AT5G59900			Pentatricopeptide repeat (PPR)...		Lus10010407 [exp]	7.5	0.6693
AT3G49710			Pentatricopeptide repeat (PPR)...		Lus10020081 [exp]	13.2	0.7276
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10038285 [exp]	13.3	0.6872
AT4G00231		MEE50	maternal effect embryo arrest ...		Lus10020777 [exp]	22.5	0.7140
AT5G08510			Pentatricopeptide repeat (PPR)...		Lus10005987 [exp]	34.5	0.6983
AT2G37060	CCAAT	NF-YB8	"nuclear factor Y, subunit B8"...		Lus10023167 [exp]	39.5	0.6754
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10018393 [exp]	41.1	0.6991

Compare expression of checked genes

Lus10036889 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.