Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26610 80 / 5e-18 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G02030 65 / 4e-13 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G60580 62 / 4e-12 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G45120 62 / 5e-12 C2H2ZnF C2H2-like zinc finger protein (.1) AT5G03510 54 / 3e-09 C2H2ZnF C2H2-type zinc finger family protein (.1) AT1G26590 54 / 3e-09 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G19580 54 / 5e-09 C2H2ZnF AZF2 zinc-finger protein 2 (.1.2) AT1G27730 50 / 8e-08 C2H2ZnF ZAT10, STZ salt tolerance zinc finger (.1) AT1G02040 50 / 1e-07 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G04390 49 / 3e-07 C2H2ZnF C2H2-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037095 [exp] 236 / 5e-77 AT1G26610 229 / 6e-70 C2H2-like zinc finger protein (.1) Lus10026654 [exp] 90 / 1e-21 AT1G26610 233 / 1e-71 C2H2-like zinc finger protein (.1) Lus10004659 [exp] 89 / 4e-21 AT1G26610 219 / 1e-66 C2H2-like zinc finger protein (.1) Lus10009278 [exp] 66 / 2e-13 AT2G45120 161 / 2e-48 C2H2-like zinc finger protein (.1) Lus10021637 [exp] 64 / 2e-12 AT1G02030 99 / 8e-23 C2H2-like zinc finger protein (.1) Lus10000679 [exp] 61 / 2e-11 AT2G45120 91 / 3e-20 C2H2-like zinc finger protein (.1) Lus10015888 [exp] 59 / 4e-11 AT3G60580 126 / 3e-35 C2H2-like zinc finger protein (.1) Lus10023912 [exp] 58 / 2e-10 AT5G03510 160 / 1e-47 C2H2-type zinc finger family protein (.1) Lus10003463 [exp] 58 / 2e-10 AT1G26610 112 / 2e-28 C2H2-like zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G159600 [exp] 92 / 3e-22 AT1G26610 298 / 6e-96 C2H2-like zinc finger protein (.1) Potri.008G094500 [exp] 80 / 3e-18 AT1G26610 223 / 3e-67 C2H2-like zinc finger protein (.1) Potri.002G143800 [exp] 69 / 2e-14 AT3G60580 199 / 1e-61 C2H2-like zinc finger protein (.1) Potri.001G157700 [exp] 65 / 5e-13 AT3G60580 159 / 2e-46 C2H2-like zinc finger protein (.1) Potri.014G066100 [exp] 63 / 2e-12 AT3G60580 176 / 1e-52 C2H2-like zinc finger protein (.1) Potri.003G077200 [exp] 63 / 3e-12 AT3G60580 151 / 2e-43 C2H2-like zinc finger protein (.1) Potri.004G118100 [exp] 60 / 5e-11 AT3G49930 80 / 9e-17 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.017G091800 [exp] 57 / 3e-10 AT5G67450 77 / 9e-16 zinc-finger protein 1 (.1) Potri.004G205300 [exp] 54 / 5e-09 AT4G35280 236 / 2e-76 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) Potri.004G216900 [exp] 53 / 7e-09 AT2G28200 172 / 4e-52 C2H2-type zinc finger family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036890 pacid=23171048 polypeptide=Lus10036890 locus=Lus10036890.g ID=Lus10036890.BGIv1.0 annot-version=v1.0 ATGAGCTGTTTAATGAGGAAGGAAGCCAAAGATGATAGCTTTATTGGAGGGCAACAACAAAGAAGAATCATCCAGGAGCATCAGAAGAAGAAGGCCAGAG ACGTCACATATGAGAGCGGGGAGAACAGCTTCGAGGCCGAACCAACCACGATTCCGAGCAAGAAGAAGATGGTAGTTAAGTCATGGAACAACAATGGGAG AAAGAACCCTCCACCAGCAGCAAAGGGCAATGCAGCACTATCCAAAAAGGCCAAAACCCATGAGTGTCCATTCTGTAACAAGGTGTTCAAGTCTGGCCAA GCCTTGGGAGGGCACAAAAGGTCCCATTTTGTTAGGGCATCTGATCATGATGGAAATGCAACTTTGGTGATCAAGTCATCAGCTGCTGGAATGATTGATC TCAACCTCCCTGCTCCTGAAGAACAAGGAAATGCAAATGGGTTTGTCACCTGGTAG
AA sequence Show only first row Show all	>Lus10036890 pacid=23171048 polypeptide=Lus10036890 locus=Lus10036890.g ID=Lus10036890.BGIv1.0 annot-version=v1.0 MSCLMRKEAKDDSFIGGQQQRRIIQEHQKKKARDVTYESGENSFEAEPTTIPSKKKMVVKSWNNNGRKNPPPAAKGNAALSKKAKTHECPFCNKVFKSGQ ALGGHKRSHFVRASDHDGNATLVIKSSAAGMIDLNLPAPEEQGNANGFVTW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10036890 [exp]	0	1
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10037095 [exp]	4.2	0.7427
AT5G27870			Plant invertase/pectin methyle...		Lus10020313 [exp]	4.7	0.7779
AT2G26390			Serine protease inhibitor (SER...		Lus10039336 [exp]	6.6	0.7839
AT2G29040			Exostosin family protein (.1)		Lus10003440 [exp]	9.9	0.7650
AT3G24060			Plant self-incompatibility pro...		Lus10017719 [exp]	14.4	0.7581
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10028418 [exp]	15.7	0.7534
AT4G02210			unknown protein		Lus10010304 [exp]	17.1	0.6139
					Lus10019810 [exp]	18.3	0.7557
AT5G12060			Plant self-incompatibility pro...		Lus10023195 [exp]	19.8	0.7525
AT4G05130		ATENT4	equilibrative nucleoside trans...		Lus10002590 [exp]	20.5	0.7484

Compare expression of checked genes

Lus10036890 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.