Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69310 198 / 3e-61 WRKY ATWRKY57, WRKY57 WRKY DNA-binding protein 57 (.1.2) AT4G18170 145 / 1e-40 WRKY ATWRKY28, WRKY28 WRKY DNA-binding protein 28 (.1) AT2G47260 145 / 2e-40 WRKY ATWRKY23, WRKY23 WRKY DNA-binding protein 23 (.1) AT1G29860 133 / 2e-36 WRKY ATWRKY71, WRKY71 WRKY DNA-binding protein 71 (.1) AT5G46350 132 / 7e-36 WRKY ATWRKY8, WRKY8 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 8, WRKY DNA-binding protein 8 (.1) AT5G49520 133 / 2e-35 WRKY ATWRKY48, WRKY48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) AT4G39410 125 / 2e-33 WRKY ATWRKY13, WRKY13 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) AT2G44745 121 / 1e-32 WRKY WRKY12 WRKY family transcription factor (.1) AT3G62340 120 / 1e-31 WRKY ATWRKY68, WRKY68 WRKY family transcription factor (.1) AT2G46130 105 / 4e-28 WRKY ATWRKY43, WRKY43 WRKY DNA-binding protein 43 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037094 [exp] 429 / 5e-151 AT1G69310 209 / 1e-65 WRKY DNA-binding protein 57 (.1.2) Lus10004612 [exp] 144 / 3e-40 AT1G29860 188 / 3e-58 WRKY DNA-binding protein 71 (.1) Lus10037785 [exp] 143 / 2e-39 AT5G49520 179 / 4e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10004537 [exp] 139 / 1e-38 AT1G29860 188 / 1e-58 WRKY DNA-binding protein 71 (.1) Lus10017067 [exp] 139 / 5e-38 AT5G49520 184 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10012678 [exp] 118 / 2e-30 AT4G39410 169 / 4e-50 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) Lus10012547 [exp] 112 / 2e-30 AT5G13080 172 / 2e-56 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10020832 [exp] 115 / 6e-30 AT4G39410 169 / 3e-51 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) Lus10007906 [exp] 112 / 3e-29 AT1G64000 168 / 6e-54 WRKY DNA-binding protein 56 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G094000 [exp] 223 / 3e-71 AT1G69310 213 / 3e-68 WRKY DNA-binding protein 57 (.1.2) Potri.010G160100 [exp] 218 / 6e-69 AT1G69310 208 / 4e-66 WRKY DNA-binding protein 57 (.1.2) Potri.002G193000 [exp] 147 / 1e-41 AT2G47260 185 / 3e-56 WRKY DNA-binding protein 23 (.1) Potri.014G118200 [exp] 147 / 3e-41 AT2G47260 190 / 5e-58 WRKY DNA-binding protein 23 (.1) Potri.008G103300 [exp] 147 / 7e-41 AT5G49520 170 / 3e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.001G352400 [exp] 143 / 5e-40 AT1G29860 184 / 1e-56 WRKY DNA-binding protein 71 (.1) Potri.002G059100 [exp] 143 / 6e-40 AT4G18170 176 / 1e-52 WRKY DNA-binding protein 28 (.1) Potri.011G079300 [exp] 142 / 1e-39 AT1G29860 186 / 2e-57 WRKY DNA-binding protein 71 (.1) Potri.005G203200 [exp] 142 / 2e-39 AT4G18170 187 / 3e-57 WRKY DNA-binding protein 28 (.1) Potri.010G147700 [exp] 142 / 4e-39 AT5G49520 182 / 8e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10036891 pacid=23171118 polypeptide=Lus10036891 locus=Lus10036891.g ID=Lus10036891.BGIv1.0 annot-version=v1.0 ATGGACGACGAAGGCAATAACAACAGTAGCAGCAATCATCCCGATCCGACAGCCAACCACCACGACAACTTCAATCTCATCGGCGACTCCTCCTGCTGGA CCTCCGCTCTCGGATCCAGCTACTTATTCTTCCCCGGTATCGGTGAAAGATCCGACAGCTCATCCATACTCAGTGACTTCGGATGGAGCGGCGCTCATCC GCATCCTCCTCTTTTCCACAGCTCCACCGAAGAGCTGGAGATCGGACAAACGAACAACCTCCTCTGCTCGACCGAGAGCAGCAGCGGCTTACAGGGATCC AGCGGCGGCGGCAGAGGAGAAGCACCGTCGGTTTCGAATCCTTCGGTGTCGAATCCGTCCGTATCGTCGAGTTCGAGCGAGGATCCGGAGAAGTCGACGG GATCCGGCGGTAAGCCGCCTGAGATACCGAGCAATAAGGGCGCCGGAAAGAAGAAAGGGCAGAAGAGAATCCGGCAGCCACGATTTGCGTTCGTGACAAA GAGTGAAATCGATCATCTCGAAGACGGCTACCGGTGGCGGAAGTACGGTCAGAAGGCCGTCAAAAACAGCCCTTTCCCAAGGAGCTACTACCGGTGCACG AACAGCAAATGCACGGTGAAGAAGAGGGTCGAGCGGTCCTCGGAAGATCCCACCACCGTCATTACCACTTACGAAGGCCAGCATTGCCACCACACCGTCG GCTTCCCCCGCGGCGCCGGTACGTTCATCGGCCATCATCATCATTTCCATGACTTGGCTCCGCCATATGGACCGCCGATGACCTCGTCAATGTCTTCGCC GCATCTCTACCACCCTGCTTCTGCCGGAATCCACCGTGGCGGTAGTGGTGATGCGATGATGATGACGCAGCAGCCTCCTCGGCAGCCGCACCAAGTGCAA GTAGAGCAAGGAAGCGAGTCTGACGATGATCGGAGAGACGGCAGAGGTGTTGGTGAAAGGGAGCCGGGTGAGACTCGTCAGAAACACCGGCGGTTTCCTA CCGACGAAGGACTCCTTGGTGATCTTGTGCCTCCCGGAATGCGCAACCGATGA
AA sequence Show only first row Show all	>Lus10036891 pacid=23171118 polypeptide=Lus10036891 locus=Lus10036891.g ID=Lus10036891.BGIv1.0 annot-version=v1.0 MDDEGNNNSSSNHPDPTANHHDNFNLIGDSSCWTSALGSSYLFFPGIGERSDSSSILSDFGWSGAHPHPPLFHSSTEELEIGQTNNLLCSTESSSGLQGS SGGGRGEAPSVSNPSVSNPSVSSSSSEDPEKSTGSGGKPPEIPSNKGAGKKKGQKRIRQPRFAFVTKSEIDHLEDGYRWRKYGQKAVKNSPFPRSYYRCT NSKCTVKKRVERSSEDPTTVITTYEGQHCHHTVGFPRGAGTFIGHHHHFHDLAPPYGPPMTSSMSSPHLYHPASAGIHRGGSGDAMMMTQQPPRQPHQVQ VEQGSESDDDRRDGRGVGEREPGETRQKHRRFPTDEGLLGDLVPPGMRNR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69310	WRKY	ATWRKY57, WRKY5...	WRKY DNA-binding protein 57 (....		Lus10036891 [exp]	0	1
AT5G26250			Major facilitator superfamily ...		Lus10010532 [exp]	35.0	0.6978
AT1G54070			Dormancy/auxin associated fami...		Lus10013180 [exp]	37.3	0.6936
AT5G03670			unknown protein		Lus10023875 [exp]	55.0	0.7168
AT4G13270			Late embryogenesis abundant (L...		Lus10011095 [exp]	59.4	0.7479
AT4G25000		AMY1, AMY3, ATA...	alpha-amylase-like (.1)		Lus10042655 [exp]	60.8	0.7046
AT3G07870			F-box and associated interacti...		Lus10006403 [exp]	61.1	0.7505
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10013579 [exp]	69.7	0.7070
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10004968 [exp]	80.6	0.7202
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10042805 [exp]	83.2	0.6750
AT4G31130			Protein of unknown function (D...		Lus10030038 [exp]	83.7	0.6698

Compare expression of checked genes

Lus10036891 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.