Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29320 1080 / 0 PHS1 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) AT3G46970 849 / 0 ATPHS2, PHS2 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037093 [exp] 1378 / 0 AT3G29320 1378 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Lus10042688 [exp] 701 / 0 AT3G29320 1422 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Lus10001200 [exp] 575 / 0 AT3G46970 1377 / 0.0 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1) Lus10029643 [exp] 543 / 0 AT3G29320 863 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Lus10029644 [exp] 523 / 0 AT3G29320 538 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Lus10007546 [exp] 53 / 5e-07 ND 63 / 1e-10
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G160200 [exp] 1183 / 0 AT3G29320 1397 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Potri.009G041800 [exp] 852 / 0 AT3G46970 1445 / 0.0 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1) Potri.004G123600 [exp] 713 / 0 AT3G29320 727 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Potri.004G048600 [exp] 441 / 4e-141 AT3G46970 842 / 0.0 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1) Potri.008G093901 [exp] 127 / 2e-34 AT3G29320 131 / 8e-37 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00343 [flax] [poplar] Phosphorylase Carbohydrate phosphorylase
Representative CDS sequence Show only first row Show all	>Lus10036892 pacid=23170994 polypeptide=Lus10036892 locus=Lus10036892.g ID=Lus10036892.BGIv1.0 annot-version=v1.0 ATGACGCAGAATGCAATTCGTGATAAAGATTGCAGATTCTTCCCCCACCCCCTGAGAAGTCCGAAAATGGTTGACAGAGCATTGCTGAATGCCATTGGGA ATCTGGAGCTGTCTGGTGCTTATGCTGATGCTCTCAAAACATTGGGGTATTCCCTTGAAGATGTAGCCAAACAGATGGGGAATCCATGGGAGATAGTGCG GAACGATGTTTCATACCCGGTGAAGTTCTACGGGGAAGTGAAGGTGAATCCTGACGGAAGCAAAGAATGGATTGGAGGAGAAGACATAACAGCTGTGGCT TATGATGTTCCGATTCCGGGGTACAAGACCAAGACAACGTTGAACCTGAGGCTATGGTCCACGAAGCTTGATCCCCAAGCATTCGATCTACATGCTTTCA ATACTGGAGATCATGTCAAGGCATATGCTGCCATGAACAATGCTGAAAAGATTTGCTATGTGTTGTACCCTGGGGACGAGTCGCGAGAAGGGAAGACTCT TAGGTTGAAGCAGCAATACACATTATGTTCTGCATCTCTCCAGGACATAATAGCTAGGTTCGAGAGGAGATCGTGTTCGGGTGACGAAAGTTCATCGAAT TGGGAAGATTTTCCTGAGAAAGTTGCTGTCCAGATGAACGACACTCACCCGACATTGTGCATTCCTGAGCTGATCAGGATTCTTGTAGATGTGAAAGGTT TGAGCTGGAGAGAAGCTTGGAATATCACTAGGAGAACTGTTGCTTATACAAACCACACTGTTTTGCCTGAGGCACTGGAGAAATGGAGTTTGGACCTTGT TCAGGAGTTGCTTCCCAGGCATGTAGAGATCATTAAACTGATTGACGAAGAGCTGATTCACACCATAATTGAGGAATATGGAGCTGAAGATGTTGACTTG TGGCATAAAAATCTCAAGGAAATGAGGATTCTTGACAACTTTGAGCTGCCTGAGTCAGTTCTGGAGCTGCTGGTTCCACCAGTAGAAGAAACTCCGAAAC TCGAGGAAAAGGAAAAACAAGAACAAGAAGAACAAGAAGAAGATGCCGATGTAGCTGAGGAAAAAGAGGAGACAAATGAGCTGTTTGAGCCAGATCCATC GCTGCCGAAGCAGGTGAGAATGGCGAATCTGTGCATCGCCGGGGGGTTTGCTGTGAATGGAGTAGCAGAGATCCACAGCGAGATCGTAAAGAACGAAGTC TTCAACGATTTCTACAAGCTGTGGCCTGAGAAGTTCCAGAACAAGACCAATGGAGTGACACCAAGGAGATGGATCCGGTTCTGCAATCCTGATCTCAGCG GCATCATAACGAAATGGACCGGAACTGAACACTGGATTCTGGACGCTGAGAAGCTAGTCAAGCTCAGAAACTTTGCAGATGACGAGGAGCTCCAAACCGA ATGGCGAGAGTCGAAGAGGAGGAACAAGGCGAAGGTGGCGGATTTTTTGAAGGAGAAGACAGGATACACAGTCAGCCCGGATGCGATGTTTGATGTGCAG GTGAAGAGGATCCATGAGTACAAGAGGCAGCTACTGAACATACTGGGGATCGTTTACCGGTACAAGAAGATGAAAGAGATGGCAAGTGACGAAGAACGGA GATCGAGTTATGTCCCCAGGGTTTGCATATTTGGTGGCAAGGCTTTTGCTACCTATGTTCAAGCCAAGAGGATTGTCAAGTTCATCACTGATGTTGGTGC CACCATCAACCATGACCCCGAAATCGGTGACCTTCTCAAGGTTGTGTTTGTACCGGACTACAATGTGAGTGTTGCGGAGGTGCTTATACCAGGAAGCGAG CTCTCGCAGCACATAAGCACGGCGGGGATGGAAGCAAGTGGGACGAGCAACATGAAGTTTTCGATGAACGGATGTGTCCTAATAGGGACATTGGATGGTG CCAATGTGGAGATAAGGGAAGAAGTTGGTGAAGACAACTTCTTCCTCTTTGGTGCCAAAGCACACGAAATTGCTACCCTAAGGGAAGAACGAGCCAAAGG CAAGTTCGTACCGGATCCGAGATTCGAGGAAGTGAAGCAGTACGTACGGAGCGGGGCGTTCGGATCGTACAACTACAATGAGTTGATGGGATCATTGGAA GGGAATGAAGGGTATGGAAGAGCCGATTACTTCCTTGTTGGTAAAGACTTCCCAAGCTACATTGAGTGCCAAGACCAAGTTGACTTGGCATACAAGGACC AGAAGAGATGGACGAAGATGTCGATCATGAACACAGCGGGATCGTTCAAGTTCAGCAGTGACAGAACCATTCATCAATATGCTAATGAGATTTGGCGGAT CAACCCTCTCCAGCTTCCTAATTAA
AA sequence Show only first row Show all	>Lus10036892 pacid=23170994 polypeptide=Lus10036892 locus=Lus10036892.g ID=Lus10036892.BGIv1.0 annot-version=v1.0 MTQNAIRDKDCRFFPHPLRSPKMVDRALLNAIGNLELSGAYADALKTLGYSLEDVAKQMGNPWEIVRNDVSYPVKFYGEVKVNPDGSKEWIGGEDITAVA YDVPIPGYKTKTTLNLRLWSTKLDPQAFDLHAFNTGDHVKAYAAMNNAEKICYVLYPGDESREGKTLRLKQQYTLCSASLQDIIARFERRSCSGDESSSN WEDFPEKVAVQMNDTHPTLCIPELIRILVDVKGLSWREAWNITRRTVAYTNHTVLPEALEKWSLDLVQELLPRHVEIIKLIDEELIHTIIEEYGAEDVDL WHKNLKEMRILDNFELPESVLELLVPPVEETPKLEEKEKQEQEEQEEDADVAEEKEETNELFEPDPSLPKQVRMANLCIAGGFAVNGVAEIHSEIVKNEV FNDFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSGIITKWTGTEHWILDAEKLVKLRNFADDEELQTEWRESKRRNKAKVADFLKEKTGYTVSPDAMFDVQ VKRIHEYKRQLLNILGIVYRYKKMKEMASDEERRSSYVPRVCIFGGKAFATYVQAKRIVKFITDVGATINHDPEIGDLLKVVFVPDYNVSVAEVLIPGSE LSQHISTAGMEASGTSNMKFSMNGCVLIGTLDGANVEIREEVGEDNFFLFGAKAHEIATLREERAKGKFVPDPRFEEVKQYVRSGAFGSYNYNELMGSLE GNEGYGRADYFLVGKDFPSYIECQDQVDLAYKDQKRWTKMSIMNTAGSFKFSSDRTIHQYANEIWRINPLQLPN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Lus10036892 [exp]	0	1
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Lus10037093 [exp]	1.0	0.9380
AT1G08550		AVDE1, NPQ1	ARABIDOPSIS VIOLAXANTHIN DE-EP...		Lus10042524 [exp]	6.9	0.9148
AT4G33520		AtHMAC6, HMA6, ...	Arabidopsis thaliana heavy met...		Lus10036161 [exp]	15.7	0.8643
AT1G18170			FKBP-like peptidyl-prolyl cis-...		Lus10038954 [exp]	20.3	0.8958
AT2G44920			Tetratricopeptide repeat (TPR)...		Lus10002712 [exp]	20.4	0.8945
AT5G53850			haloacid dehalogenase-like hyd...		Lus10041928 [exp]	21.2	0.8972
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Lus10003827 [exp]	21.3	0.8104
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10033987 [exp]	21.7	0.8654
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10020296 [exp]	23.8	0.8770
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Lus10018385 [exp]	27.6	0.8931

Compare expression of checked genes

Lus10036892 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.