Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13890 297 / 1e-101 ATSNAP30, SNAP30 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) AT5G61210 260 / 2e-86 SNP33, ATSNAP33B, SNAP33 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) AT5G07880 203 / 6e-65 ATSNAP29, SNAP29 ARABIDOPSIS THALIANA SYNAPTOSOMAL-ASSOCIATED PROTEIN SNAP25-LIKE 29, synaptosomal-associated protein SNAP25-like 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037092 [exp] 449 / 3e-161 AT1G13890 327 / 1e-113 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Lus10004660 [exp] 412 / 1e-146 AT1G13890 349 / 4e-122 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Lus10026653 [exp] 276 / 4e-94 AT1G13890 220 / 1e-72 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Lus10003466 [exp] 258 / 3e-85 AT5G61210 379 / 1e-132 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) Lus10015738 [exp] 256 / 7e-85 AT5G61210 381 / 1e-133 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) Lus10034705 [exp] 254 / 4e-84 AT5G61210 350 / 1e-121 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G093800 [exp] 291 / 5e-99 AT1G13890 337 / 4e-117 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Potri.015G049000 [exp] 268 / 1e-89 AT5G61210 403 / 3e-142 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) Potri.012G066700 [exp] 253 / 2e-83 AT5G61210 360 / 3e-125 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) Potri.010G160350 [exp] 237 / 7e-78 AT1G13890 266 / 2e-89 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0147 [flax] [poplar] Traffic PF12352 [flax] [poplar] V-SNARE_C Snare region anchored in the vesicle membrane C-terminus CL0147 [flax] [poplar] PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10036893 pacid=23171096 polypeptide=Lus10036893 locus=Lus10036893.g ID=Lus10036893.BGIv1.0 annot-version=v1.0 ATGTTCGGATTCCTGAAATCAGCTCCGGCCGACCCGCCAAAGCAAGACCCTCCACCACCGGCGCCGGCGAAGACGAACTCTGAACCACCGGCGAAGAAGG TAGTCGTCTACGACAGCGATTCGGACTCCGACGACGAGAAGCAATGGAGGAAGAAGCCGTCGCGGGCTGCGAAGAAGAATTACGAAAATGGGTTTCAGGA TTCGGGAGGGCTGGAGGGGCAGAGCGTTCAGGAGCTGGAGAATTACGCCGTTTATAAAGCGGAGGAGACGACGAACAGTGTGAATAACTGTTTGAAGATC GCAGAGGATATCAGACAGGACGCGTCCAAGACTCTTGACATGTTGCATGCTCAGGGGGATCAGATCCAGAGGACCCATGAGATGGCTGTTGACATGGACA AAGATTTGAGCAAGGGAGAAAAGCTATTGAACAGCCTTGGTGGGATGTTCTCCAAGCCATGGAAGCCAAAGAAAACCAAAGAGATCAACGGCCCTGTGAT TACAGAAGATAAAACATCAAGGACGAATGCCAACCACAGAGCACAGAAGGAGAAGCTGGGAATAGGGAACAAACCAGGAGCCAAATCAGCACCTGTAACT CCTCCTAATGAGCCCAGAACTGCTCTCCAGAAAGTTGATATGGAGAAGGCAAAGCAAGATGATGGACTTTCGGATTTGAGCGACATCTTGGGCGATTTGA AAGGCATGGCTGTTGACATGGGATCTGAACTTGATAGGCAAAACAAAGCATTGGATCATCTCGATGGTGACATTGATGAGCTCAACTCTCGTGTCAAAGG AGCGAATCAACGTGCTCGCCATTTGCTTTCGAAATAA
AA sequence Show only first row Show all	>Lus10036893 pacid=23171096 polypeptide=Lus10036893 locus=Lus10036893.g ID=Lus10036893.BGIv1.0 annot-version=v1.0 MFGFLKSAPADPPKQDPPPPAPAKTNSEPPAKKVVVYDSDSDSDDEKQWRKKPSRAAKKNYENGFQDSGGLEGQSVQELENYAVYKAEETTNSVNNCLKI AEDIRQDASKTLDMLHAQGDQIQRTHEMAVDMDKDLSKGEKLLNSLGGMFSKPWKPKKTKEINGPVITEDKTSRTNANHRAQKEKLGIGNKPGAKSAPVT PPNEPRTALQKVDMEKAKQDDGLSDLSDILGDLKGMAVDMGSELDRQNKALDHLDGDIDELNSRVKGANQRARHLLSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Lus10036893 [exp]	0	1
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10042741 [exp]	8.8	0.7320
AT3G02230		ATRGP1, RGP1	ARABIDOPSIS THALIANA REVERSIBL...		Lus10034376 [exp]	11.0	0.7317
AT5G08380		ATAGAL1	alpha-galactosidase 1 (.1)		Lus10010160 [exp]	17.2	0.6924
AT3G07610		IBM1	increase in bonsai methylation...		Lus10004549 [exp]	17.3	0.7192
AT1G71160		KCS7	3-ketoacyl-CoA synthase 7 (.1)		Lus10031486 [exp]	17.9	0.6749
AT1G18010			Major facilitator superfamily ...		Lus10009415 [exp]	20.5	0.6631
AT3G02125			unknown protein		Lus10013196 [exp]	21.9	0.7165
					Lus10005955 [exp]	28.1	0.6934
AT1G52560			HSP20-like chaperones superfam...		Lus10023653 [exp]	32.0	0.6938
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10026623 [exp]	33.6	0.6822

Compare expression of checked genes

Lus10036893 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.