Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03450 266 / 8e-86 PAP9, ATPAP9 purple acid phosphatase 9 (.1) AT1G13900 265 / 3e-85 Purple acid phosphatases superfamily protein (.1) AT4G24890 65 / 4e-12 ATPAP24, PAP24 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) AT5G50400 63 / 1e-11 ATPAP27, PAP27 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) AT1G13750 56 / 5e-09 Purple acid phosphatases superfamily protein (.1) AT3G52810 41 / 0.0003 ATPAP21, PAP21 purple acid phosphatase 21 (.1) AT3G20500 40 / 0.0005 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT3G07130 40 / 0.0008 ATPAP15, PAP15 purple acid phosphatase 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037091 [exp] 438 / 1e-152 AT1G13900 899 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10004661 [exp] 273 / 2e-88 AT1G13900 860 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10026652 [exp] 272 / 7e-88 AT1G13900 875 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10024179 [exp] 67 / 7e-13 AT5G50400 331 / 3e-105 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10039565 [exp] 66 / 2e-12 AT5G50400 362 / 6e-117 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10019771 [exp] 60 / 3e-10 AT5G50400 317 / 4e-100 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10016356 [exp] 59 / 3e-10 AT4G24890 332 / 7e-106 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) Lus10036902 [exp] 58 / 6e-10 AT1G13750 198 / 1e-59 Purple acid phosphatases superfamily protein (.1) Lus10037079 [exp] 57 / 3e-09 AT1G13750 928 / 0.0 Purple acid phosphatases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G160500 [exp] 303 / 5e-100 AT1G13900 903 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.001G023400 [exp] 64 / 6e-12 AT5G50400 345 / 1e-110 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.015G095900 [exp] 62 / 3e-11 AT5G50400 838 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.003G202200 [exp] 61 / 7e-11 AT5G50400 359 / 8e-116 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.012G097400 [exp] 59 / 3e-10 AT5G50400 947 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.010G158400 [exp] 58 / 7e-10 AT1G13750 962 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.010G158250 [exp] 58 / 8e-10 AT1G13750 967 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.008G096000 [exp] 49 / 1e-06 AT1G13750 927 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.011G138200 [exp] 44 / 6e-05 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036894 pacid=23171179 polypeptide=Lus10036894 locus=Lus10036894.g ID=Lus10036894.BGIv1.0 annot-version=v1.0 ATGTACACCACAAGCAACGAGGTTAGGGATGCTCCGATGAGGCAGAAGATGCAGGAGCACTTGGAGCCCTTACTAGTGACCTACAATGTCACAATGGCTC TGTGGGGACATGTCCACAGGTATGAGAGGTTCTGTCCGTTGAATAACTTTGAATGCGGCCAGACATGGAAAGGGTTTCCAGTCCATGTTGTGATTGGGAT GGCCGGACAAGATTGGCAGCCTACTTGGGAACCTAGACCGGAACACCCGGATATGCCGGTCTTCCCACAGCCCAAACGGTCCATGTATAAAGGGGGAGAG TTCGGGTACACGAGATTGACGGCCACGAAGGAGAAGCTCACGTTCTCGTACGTGGGGAACCACGATGGACAAGTGCACGACATGTTCGAGATACTCGCAT CAGGGGAGGTTCTGAGTGGAAACATTGCCAATGGCTCGATGGGAGGAGCAAAAGGTTCGGAATTCAATCACCATTCTATGCTCTTCTCGAAGTATGTTAA GGGTGCAAGCATTCTGGTGTTGGGTGCTTTCATCGGTTACATTGTCGGGTTCCTTTCGCATGCCAGGAAGAAGAAGCAGGTTGCGCAGAATGGTGACTGG ACTCGAGTTAAAAACGAGGAGACATGA
AA sequence Show only first row Show all	>Lus10036894 pacid=23171179 polypeptide=Lus10036894 locus=Lus10036894.g ID=Lus10036894.BGIv1.0 annot-version=v1.0 MYTTSNEVRDAPMRQKMQEHLEPLLVTYNVTMALWGHVHRYERFCPLNNFECGQTWKGFPVHVVIGMAGQDWQPTWEPRPEHPDMPVFPQPKRSMYKGGE FGYTRLTATKEKLTFSYVGNHDGQVHDMFEILASGEVLSGNIANGSMGGAKGSEFNHHSMLFSKYVKGASILVLGAFIGYIVGFLSHARKKKQVAQNGDW TRVKNEET

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13900			Purple acid phosphatases super...		Lus10036894 [exp]	0	1
AT1G63900		DAL1	DIAP1-like protein 1, E3 Ubiqu...		Lus10008163 [exp]	12.4	0.6785
AT1G15060			Uncharacterised conserved prot...		Lus10034107 [exp]	13.0	0.6632
AT1G76570			Chlorophyll A-B binding family...		Lus10005421 [exp]	17.0	0.6748
AT2G47890	CO	COL13	B-box type zinc finger protein...		Lus10005936 [exp]	19.7	0.6774
AT1G60730			NAD(P)-linked oxidoreductase s...		Lus10037408 [exp]	26.2	0.6305
AT3G26600		ARO4	armadillo repeat only 4 (.1)		Lus10026695 [exp]	28.5	0.6656
AT3G62040			Haloacid dehalogenase-like hyd...		Lus10038016 [exp]	30.0	0.6259
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10012959 [exp]	32.3	0.6640
AT1G28600			GDSL-like Lipase/Acylhydrolase...		Lus10011338 [exp]	35.5	0.6443
AT3G23610		DSPTP1	dual specificity protein phosp...		Lus10041227 [exp]	42.7	0.6368

Compare expression of checked genes

Lus10036894 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.