Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13900 309 / 1e-100 Purple acid phosphatases superfamily protein (.1) AT2G03450 300 / 3e-97 PAP9, ATPAP9 purple acid phosphatase 9 (.1) AT1G13750 103 / 1e-24 Purple acid phosphatases superfamily protein (.1) AT4G24890 99 / 9e-23 ATPAP24, PAP24 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) AT5G50400 97 / 3e-22 ATPAP27, PAP27 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) AT3G52780 48 / 5e-06 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT3G52820 45 / 6e-05 ATPAP22, PAP22 purple acid phosphatase 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037091 [exp] 448 / 7e-155 AT1G13900 899 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10004661 [exp] 339 / 3e-112 AT1G13900 860 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10026652 [exp] 332 / 1e-109 AT1G13900 875 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10039565 [exp] 101 / 1e-23 AT5G50400 362 / 6e-117 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10016356 [exp] 92 / 1e-20 AT4G24890 332 / 7e-106 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) Lus10012144 [exp] 91 / 3e-20 AT5G50400 885 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10037079 [exp] 90 / 1e-19 AT1G13750 928 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10036904 [exp] 89 / 1e-19 AT1G13750 928 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10019771 [exp] 89 / 1e-19 AT5G50400 317 / 4e-100 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G160500 [exp] 354 / 2e-118 AT1G13900 903 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.003G202200 [exp] 100 / 3e-23 AT5G50400 359 / 8e-116 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.010G158250 [exp] 100 / 3e-23 AT1G13750 967 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.001G023400 [exp] 98 / 2e-22 AT5G50400 345 / 1e-110 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.010G158400 [exp] 95 / 2e-21 AT1G13750 962 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.015G095900 [exp] 95 / 2e-21 AT5G50400 838 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.012G097400 [exp] 92 / 2e-20 AT5G50400 947 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.008G096000 [exp] 91 / 3e-20 AT1G13750 927 / 0.0 Purple acid phosphatases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036895 pacid=23171286 polypeptide=Lus10036895 locus=Lus10036895.g ID=Lus10036895.BGIv1.0 annot-version=v1.0 ATGTCGACTCCCCGTCGAAGCTTGACTGGCTCGGAATCTACTCCCCTCCTTCTTCCCCTCACGACCACTTCATCGGGTACAAGTTCCTATCCTCCTCCCC CGGGTGGGAATCCGGGTCGGGTTCCCTGTCCATACCAATCACCAACCTCCGATCCAACTACTCGTTCCGGATCTTCCGCTGGACGGAAGACCGCCAAGCT CCGTGACCAGGACGAGAATCCGCTTCCGGGGACGAAGCACCTGCTAGCGGAGTCTGATGGAGTCGTCCTGTTCGGGTCGGGGAATGGGCCGGAGCAGATC CATCTCGCGTTTACGGATCGAGCTGACGAGATGAGGGTGATGTTCTTGACTGGAGATGGCGACGAGAGGAAGGTCCGGTGGGGGGAGACCGACGGCGCGT GGAGTAAGGAAGCGGCGGCGCGTGTGGGGAGGTATGAAAAGGAGGATATGTGTGATTCGCCGGCGAATAGCTCTGTTGGGTGGAGAGATCCGGGTTGGAT TCATGATGGGGTAATGAAGGATTTGAAGCAAGGTTTCAGATACTATTACCAGGTTGGAAGTGACTCAAAGGGATGGAGTAAAGCTCAAACCTTTGTGTCA AGGAACGAAGATTCAGACGAGACAACAGCATTCCTATTTGGCGACATGGGAACATCAGCACCATATGCAACATTCATCCGTACGCAATCCGAAAGCGTAT CAACAGTGAACTTGATCCTCCGTGATATGGAGAGACTCGGGGAGAAGCCAGCATTTGTTTCCCACATTGGTGACATAAGCTACGCAAGGGGGTATTCATG GATATGGGACCATTTCTTCACACAAATTGAGCCGATCTCTTCGAGATTGGCATACCCGGAACCTCTACTGCTCGTTCGATTTCGGGGCGGTGCATTTCGT TTACATCTCAACTGA
AA sequence Show only first row Show all	>Lus10036895 pacid=23171286 polypeptide=Lus10036895 locus=Lus10036895.g ID=Lus10036895.BGIv1.0 annot-version=v1.0 MSTPRRSLTGSESTPLLLPLTTTSSGTSSYPPPPGGNPGRVPCPYQSPTSDPTTRSGSSAGRKTAKLRDQDENPLPGTKHLLAESDGVVLFGSGNGPEQI HLAFTDRADEMRVMFLTGDGDERKVRWGETDGAWSKEAAARVGRYEKEDMCDSPANSSVGWRDPGWIHDGVMKDLKQGFRYYYQVGSDSKGWSKAQTFVS RNEDSDETTAFLFGDMGTSAPYATFIRTQSESVSTVNLILRDMERLGEKPAFVSHIGDISYARGYSWIWDHFFTQIEPISSRLAYPEPLLLVRFRGGAFR LHLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13900			Purple acid phosphatases super...		Lus10036895 [exp]	0	1
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Lus10023929 [exp]	4.5	0.8746
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10007949 [exp]	6.3	0.8581
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10001718 [exp]	7.4	0.8245
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10027657 [exp]	7.5	0.7913
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10009690 [exp]	10.6	0.8413
AT2G27950			Ring/U-Box superfamily protein...		Lus10021403 [exp]	11.2	0.8420
AT1G08800			Protein of unknown function, D...		Lus10018782 [exp]	20.5	0.7899
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10020003 [exp]	23.2	0.7937
AT3G50120			Plant protein of unknown funct...		Lus10009871 [exp]	25.1	0.7948
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10036039 [exp]	26.7	0.8213

Compare expression of checked genes

Lus10036895 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.