Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66200 243 / 7e-73 ARO2 armadillo repeat only 2 (.1) AT4G36030 218 / 2e-63 ARO3 armadillo repeat only 3 (.1) AT4G34940 212 / 3e-61 ARO1 armadillo repeat only 1 (.1) AT3G26600 132 / 1e-32 ARO4 armadillo repeat only 4 (.1) AT1G26470 114 / 3e-30 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028452 [exp] 290 / 2e-90 AT5G66200 965 / 0.0 armadillo repeat only 2 (.1) Lus10037087 [exp] 270 / 2e-88 AT5G66200 221 / 1e-68 armadillo repeat only 2 (.1) Lus10041905 [exp] 284 / 4e-88 AT5G66200 966 / 0.0 armadillo repeat only 2 (.1) Lus10027837 [exp] 216 / 1e-64 AT4G34940 574 / 0.0 armadillo repeat only 1 (.1) Lus10027838 [exp] 209 / 3e-64 AT4G34940 396 / 2e-135 armadillo repeat only 1 (.1) Lus10037086 [exp] 207 / 1e-62 AT5G66200 354 / 3e-118 armadillo repeat only 2 (.1) Lus10025059 [exp] 213 / 4e-61 AT4G34940 973 / 0.0 armadillo repeat only 1 (.1) Lus10037088 [exp] 182 / 2e-55 AT1G26470 131 / 4e-40 unknown protein Lus10004620 [exp] 121 / 6e-29 AT3G26600 661 / 0.0 armadillo repeat only 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G113000 [exp] 262 / 8e-80 AT5G66200 966 / 0.0 armadillo repeat only 2 (.1) Potri.004G172500 [exp] 224 / 1e-65 AT4G34940 1020 / 0.0 armadillo repeat only 1 (.1) Potri.009G131900 [exp] 222 / 8e-65 AT4G34940 986 / 0.0 armadillo repeat only 1 (.1) Potri.010G159200 [exp] 162 / 7e-48 AT1G26470 144 / 3e-45 unknown protein Potri.008G095100 [exp] 153 / 2e-44 AT1G26470 141 / 2e-44 unknown protein Potri.015G082800 [exp] 140 / 1e-35 AT3G26600 610 / 0.0 armadillo repeat only 4 (.1) Potri.010G045500 [exp] 138 / 6e-35 AT3G26600 632 / 0.0 armadillo repeat only 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07904 [flax] [poplar] Eaf7 Chromatin modification-related protein EAF7 CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10036897 pacid=23171248 polypeptide=Lus10036897 locus=Lus10036897.g ID=Lus10036897.BGIv1.0 annot-version=v1.0 ATGTCGAGCCGAAGGTATAACGAACCGGATCCTCACCACAATCCCCGTATCCAAATTTCGAGTGGCGATCAGCTGGAGAACTCAATCCCCGACATTTCCT GGCTCATCCGTGTCTCCGCTGGACTCTCGCCCTCCGATGCCAACCTCCGTCTGATATGGGAGCAGGTTGCGATTCTCGACATCGGTTCGCTTAACCGGTC TAATGCTGCAGCTTCGCTTGTTTCATTAATGAGCGATGATGACCGTACTTGCTGTAAGTTGATAATTGAAGAAGGCGGGGTTCGTCCGTTCCTGAAATTG GTAGAGGAAGAGGAACCGGAAGGTCAGGAGAACGCTGCAAGAGCGATTGGGTTACCAGGTCGCGATCCTGGAAGCGCTGAGCAAATGGTTCAGGCCGGGG TTTGCTCAGTGTTTGCGGAAATCCTCAAAGGTGGCTTGCCAGTGAAGGTTCAGGCAGTAGTGGCCTTGGCTGTTTCGCAGCTAACTGCAAGGACACTTGG GAACCTAGCAAAGGGGAATTCGCCAATCTGTCGCAGCATAACCAAGTCAAGAGCTCTGCTTTGCTTTGCAGTTCTGTTAGAGAAAAGAAGCAGTGAGGAA GTTCGGTACAATTCAGTCATGGCAGTAATGGAGTTGACGGCAGTAGCGGAAGAGAATTCTGATCTTAGAAAAGCAGCATTCAAACCTAATGCTCCTGCTT GCAAAGCTCTGGTTGATCAATTGTTGAGAATCATTATTGAGAAACCTGATTATTCGGAGCTTCTGATCATACCGTGTATCAAATCAATCGGCAATTTGGC GAGAACGTTTAGAGGTATGGAAATCCAGATGATTATCCCCGCTCTGGTTGATCTCTTGGACGAGAAGGAATTAACTGAAGTTTCGAGGGAGGCTGCGGTT GCTTTGACGAAGTTTTTCCGCTCTGATAACTATCTTCATCTCGACCACTCCAAAGGAATCGTCGCTGCCGGAGGTGCAAAGCGTTTGGTCCAGCTTGGGT ACTTTGGTAAAGAATTCGTTCAGGTTTCGGCTCTGATACTTATTTGCTACATCGCTTCGCACGTTCCGGAATGTGAAGAGGTTGTTGAGGTAGAAGTGAT GGCTGCCATGGACTCTCGGAATGAAATCCTGGATCCCCTGCTTCCTGAAGCCAGGAGCAGGTTGGGAATCACTCGGTTAAGTTTGTCGAGGATGGACGAC GGCAAGAGCAACGGCAAAGGCAGAGAAGAGGAACAAGATGGAGTCTCCGTACACTCTCCTTGCAAAGCTCCTACATCCTCTGCTTCCTCTCTCCCTAAGG AGCAATCGCAGGTGGAACTAGAGCTCAGGCTGCTCGAAGCTCTGGCGATCTACCCCCCTGTCAAACTGCGAGGCAACTTCGATCGGTACTTCTCTCCCGA CGAGGTCACTCAGCTGCTGGAACGATTCTACAACATTGAAATGCTGAAACCTGATGACGAAGAATCAGAGATACTGAGTCAGGAGGAAGACTTCAGCTTG CCTCAGAGCTACTTCGTCAAGGAGGACTGA
AA sequence Show only first row Show all	>Lus10036897 pacid=23171248 polypeptide=Lus10036897 locus=Lus10036897.g ID=Lus10036897.BGIv1.0 annot-version=v1.0 MSSRRYNEPDPHHNPRIQISSGDQLENSIPDISWLIRVSAGLSPSDANLRLIWEQVAILDIGSLNRSNAAASLVSLMSDDDRTCCKLIIEEGGVRPFLKL VEEEEPEGQENAARAIGLPGRDPGSAEQMVQAGVCSVFAEILKGGLPVKVQAVVALAVSQLTARTLGNLAKGNSPICRSITKSRALLCFAVLLEKRSSEE VRYNSVMAVMELTAVAEENSDLRKAAFKPNAPACKALVDQLLRIIIEKPDYSELLIIPCIKSIGNLARTFRGMEIQMIIPALVDLLDEKELTEVSREAAV ALTKFFRSDNYLHLDHSKGIVAAGGAKRLVQLGYFGKEFVQVSALILICYIASHVPECEEVVEVEVMAAMDSRNEILDPLLPEARSRLGITRLSLSRMDD GKSNGKGREEEQDGVSVHSPCKAPTSSASSLPKEQSQVELELRLLEALAIYPPVKLRGNFDRYFSPDEVTQLLERFYNIEMLKPDDEESEILSQEEDFSL PQSYFVKED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10036897 [exp]	0	1
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Lus10002634 [exp]	2.0	0.8038
AT4G27120			unknown protein		Lus10043066 [exp]	2.6	0.8040
AT5G63905			unknown protein		Lus10007744 [exp]	6.7	0.7937
AT5G10370			helicase domain-containing pro...		Lus10012749 [exp]	7.6	0.7460
AT1G16916			unknown protein		Lus10032325 [exp]	10.4	0.7957
AT1G01150			Homeodomain-like protein with ...		Lus10042361 [exp]	11.0	0.7808
AT1G29850			double-stranded DNA-binding fa...		Lus10004540 [exp]	12.1	0.7963
AT2G33735			Chaperone DnaJ-domain superfam...		Lus10040535 [exp]	12.2	0.7611
AT3G29130			unknown protein		Lus10023356 [exp]	13.2	0.7892
AT5G49010		EMB2812, SLD5	SYNTHETIC LETHALITY WITH DPB11...		Lus10033618 [exp]	13.5	0.7664

Compare expression of checked genes

Lus10036897 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.