Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13740 169 / 2e-50 AFP2 ABI five binding protein 2 (.1) AT3G29575 153 / 9e-46 AFP3 ABI five binding protein 3 (.1.3.4) AT1G69260 154 / 9e-45 AFP1 ABI five binding protein (.1) AT3G07250 99 / 2e-23 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (.1) AT3G02140 92 / 2e-21 AFP4, TMAC2 TWO OR MORE ABRES-CONTAINING GENE 2, ABI FIVE BINDING PROTEIN 4, AFP2 (ABI five-binding protein 2) family protein (.1) AT4G28910 68 / 7e-13 NINJA novel interactor of JAZ (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037084 [exp] 400 / 2e-142 AT1G13740 197 / 2e-61 ABI five binding protein 2 (.1) Lus10004645 [exp] 201 / 4e-63 AT1G13740 233 / 2e-74 ABI five binding protein 2 (.1) Lus10026667 [exp] 188 / 7e-58 AT1G13740 237 / 5e-76 ABI five binding protein 2 (.1) Lus10003145 [exp] 107 / 7e-27 AT3G29575 112 / 4e-29 ABI five binding protein 3 (.1.3.4) Lus10022764 [exp] 107 / 7e-27 AT3G29575 113 / 2e-29 ABI five binding protein 3 (.1.3.4) Lus10043236 [exp] 64 / 2e-11 AT4G28910 265 / 9e-84 novel interactor of JAZ (.1.2.3) Lus10011116 [exp] 63 / 4e-11 AT4G28910 259 / 1e-81 novel interactor of JAZ (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G157900 [exp] 188 / 9e-58 AT1G13740 229 / 1e-72 ABI five binding protein 2 (.1) Potri.008G096500 [exp] 171 / 2e-51 AT1G13740 240 / 6e-77 ABI five binding protein 2 (.1) Potri.017G094500 [exp] 137 / 2e-38 AT1G13740 169 / 1e-49 ABI five binding protein 2 (.1) Potri.004G120600 [exp] 128 / 1e-34 AT1G13740 176 / 5e-52 ABI five binding protein 2 (.1) Potri.006G162900 [exp] 69 / 3e-13 AT4G28910 307 / 1e-99 novel interactor of JAZ (.1.2.3) Potri.018G085100 [exp] 66 / 3e-12 AT4G28910 324 / 3e-106 novel interactor of JAZ (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07897 [flax] [poplar] EAR Ethylene-responsive binding factor-associated repression
Representative CDS sequence Show only first row Show all	>Lus10036898 pacid=23171348 polypeptide=Lus10036898 locus=Lus10036898.g ID=Lus10036898.BGIv1.0 annot-version=v1.0 ATGGATCAAACACAAGGAACAGTGAACAGAACAATGGAGAGTCTTTCTCTGGAGATGAGCAGCTGCCCAAGGGATCTCTTGACTAGATTCGGCGGCAGCC ATAAGAAGAAACGGAGAGCAACAGGAGAAGAAGAAGGAAGTGAATCAGAGGAGATTGAGCTTAGTCTAGGATTGTCATTAGGAGGAAGATTCGGTGTCGA AAAGCTCGTTCGATCTGCGTCGATAACGGAGAGGAGGGCGGCGGAGAGTTTGTATCCTCTGCTGACGAGGACTTCGTCTCTTCCGGCGGAGACGGAGGAG GAGTGGATGAAGAGGAAGCAAATGCAGAGATTTACGACGAAGCAGACTGCGAAACGGCACCGTAGCGAGAAGCAGAGTGATCATTTGCCTTCAGAAATTG ATAGTAAGGCTACTCTTCAAGGATCAAGCACTGCTGGTGAATCGAGAAGCCCCACGAGCAACCAATCATCACAAGACCAACGCAGCCAGGCCGGTTGTTC CCCTCCCGCCACAAAGATCCACCAAAACCCCGCGAGAATCCTCAGCTATTCTTCTGGGAACAAGAAGAGGGGCAAGGGAGTCGCGGTGGAAGATATGCCC TGTGTTTTTACGGTAGGGGACGGTCCTAATGGAAGACGAGTCGAAGGGATCCTGTACAAGTACGGCAGAGGTCAGGAAGTGCGGATAATGTGCGTATGCC ACGGCAGCTTCCTGTCCCCTGCCGAATTCGTCAAGCATGCTGGTGGCGATAATGTCGACCACCCTCTGCGGCACATTGTTGTTAGCCCTTCCTTTCTGTA G
AA sequence Show only first row Show all	>Lus10036898 pacid=23171348 polypeptide=Lus10036898 locus=Lus10036898.g ID=Lus10036898.BGIv1.0 annot-version=v1.0 MDQTQGTVNRTMESLSLEMSSCPRDLLTRFGGSHKKKRRATGEEEGSESEEIELSLGLSLGGRFGVEKLVRSASITERRAAESLYPLLTRTSSLPAETEE EWMKRKQMQRFTTKQTAKRHRSEKQSDHLPSEIDSKATLQGSSTAGESRSPTSNQSSQDQRSQAGCSPPATKIHQNPARILSYSSGNKKRGKGVAVEDMP CVFTVGDGPNGRRVEGILYKYGRGQEVRIMCVCHGSFLSPAEFVKHAGGDNVDHPLRHIVVSPSFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69260		AFP1	ABI five binding protein (.1)		Lus10036898 [exp]	0	1
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10008004 [exp]	4.9	0.8702
AT5G43980		PDLP1, PDLP1A	PLASMODESMATA-LOCATED PROTEIN ...		Lus10001052 [exp]	4.9	0.8621
					Lus10017954 [exp]	6.3	0.8928
AT1G01490			Heavy metal transport/detoxifi...		Lus10027522 [exp]	7.7	0.8696
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Lus10025118 [exp]	9.2	0.8517
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Lus10026779 [exp]	13.9	0.8698
AT1G10380			Putative membrane lipoprotein ...		Lus10037236 [exp]	16.4	0.8668
AT5G43980		PDLP1, PDLP1A	PLASMODESMATA-LOCATED PROTEIN ...		Lus10001418 [exp]	16.6	0.8341
AT3G57120			Protein kinase superfamily pro...		Lus10011518 [exp]	18.3	0.8495
AT1G79910			Regulator of Vps4 activity in ...		Lus10035885 [exp]	18.5	0.8480

Compare expression of checked genes

Lus10036898 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.