Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69270 521 / 1e-179 RPK1 receptor-like protein kinase 1 (.1) AT3G02130 538 / 1e-178 TOAD2, RPK2, CLI1 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) AT2G23950 276 / 1e-83 Leucine-rich repeat protein kinase family protein (.1) AT2G35620 255 / 2e-76 FEI2 FEI 2, Leucine-rich repeat protein kinase family protein (.1.2) AT5G07280 264 / 5e-76 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G31420 246 / 9e-73 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) AT3G59110 231 / 6e-68 Protein kinase superfamily protein (.1) AT1G56720 229 / 9e-68 Protein kinase superfamily protein (.1.2.3) AT1G09440 229 / 1e-67 Protein kinase superfamily protein (.1) AT5G18500 227 / 6e-67 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037083 [exp] 1149 / 0 AT3G02130 569 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10004646 [exp] 690 / 0 AT3G02130 552 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10026666 [exp] 684 / 0 AT3G02130 555 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10010087 [exp] 504 / 6e-166 AT3G02130 962 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10007206 [exp] 503 / 3e-165 AT3G02130 964 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10031976 [exp] 421 / 6e-139 AT3G02130 531 / 2e-175 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10019145 [exp] 255 / 9e-76 AT5G16000 935 / 0.0 NSP-interacting kinase 1 (.1) Lus10034413 [exp] 251 / 2e-74 AT5G16000 937 / 0.0 NSP-interacting kinase 1 (.1) Lus10014996 [exp] 248 / 3e-70 AT5G07280 1264 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G096400 [exp] 592 / 0 AT3G02130 1140 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.004G120500 [exp] 553 / 0 AT3G02130 1375 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.017G094400 [exp] 552 / 0 AT3G02130 1405 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.014G144600 [exp] 447 / 9e-145 AT3G02130 785 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.003G105000 [exp] 266 / 3e-80 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G129000 [exp] 262 / 7e-79 AT1G31420 928 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.008G110300 [exp] 255 / 6e-76 AT3G25560 918 / 0.0 NSP-interacting kinase 2 (.1.2.3) Potri.010G134100 [exp] 250 / 4e-74 AT3G25560 927 / 0.0 NSP-interacting kinase 2 (.1.2.3) Potri.011G068700 [exp] 245 / 3e-72 AT5G45780 819 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G001600 [exp] 234 / 9e-70 AT5G18500 635 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10036899 pacid=23171031 polypeptide=Lus10036899 locus=Lus10036899.g ID=Lus10036899.BGIv1.0 annot-version=v1.0 ATGAAGCAGGAAACCTTCTTCTTCCTCCTGCTCTGTTTCTGTTCACTAGCTGTTTGCTTCTCAATCTCAGAGTCCTCGCCATCTCCCGAAAAGTCAGCGC TGCTGGACTTCAAATCCTCACTGTCCGACCCACACGGGGTTCTCACGACATGGAATTCAGACCTCCAGCACTGTTCATGGGCCGGGATCACCTGCAACTC CCGCCGACGAGTCGTCTCCCTGAAACTCCCCGCCGGAGCTTCTCTTCCTTGCCGGTACGCTTTCAAGTTACCAACTTTAGGGCTTAGGATGAAAAGGCTA TGTACTTCCGGTGCAGTGAAAGGAAAGTTGTCGCCTTTGATTGGGAAGCTTAGTGAAATTAGGGTTTTGTCTTTGCCCTTTAATGAACTGGGAGGGGAAA TCCCTGCGGAGGTTTGGGGGTTGGAGGAGCTGGAAGTGCTTGATCTTGAAGGAAACTCCTTTGTTGGGGAATTGCCTCCTGGTGGATTTTCCGGGTTGAG GAAATTGAAGGTGTTGAATCTAGGGTTCAATAGAATTGAAGGAATTGTCCCCCAGTGTTTTGGGGATCTCAGATCTCTTGTGACTCTTGATTTGAGGTTC AACAAGCTCCATGGAAAAGTTCCAGCTGGTGTTTATCTGTTGAAGCACCTGTCCTTAGCTGGTAACAATCTGACAAGGGACGAATTCGACCAGAAAACAT CCGGTTCAAGCAATGCAAGATCACTAATCGCGGATACCTTGAATCGTAAGGTTTCGCCAGGTTCAGTTCATGTGTCCATCAGGTATGATGATGCATCAGG AGCAGCTACGACTACCAGCAGAAGGGATCTGCTTGAGAATAATACCACCATGGGCGAGGCTGGAGCGAGCCACGGGCTAAGCCCAATCGAGATTGCATCG GTGGTATCTGCATCAGCAATCGTCTCGGTCCTCATACTCTTGGTTCTGCTGTTCTTCTACATGAGGAAATGGGCGCCGAATTCGAAAGTCCAGGTTTCAG AGCCAAAGGACATCATTGAATTCGTCAACATTGGAGTTCCTTTACTCTACGGGAACATCGTCCTCGCCACAGCAAACTTCAGCACGAGGAACTGCATAGG CAACGGAGGGTTCGGCGCTACTTACAAAGCCGAGATCGCACCGGGAACTTTGGTCGCCGTGAAAAGGCTGGCTGTCGGAAGGTTCCACCAAGGTGTTCAG CAGTTCCACGCCGAGATCAAGGCTCTAGGAAGGGTGAGGCACCCAAATCTCGTAACCCTAGTAGGCTACCACGCGAGCGAGACCGAGATGTTCTTGATAT ACAACTACTTAGCCGGAGGGAACCTCGAGGCCTTCATTAGAGGGAGATCGGCCGCAACGGTTCAGTGGAAGATCCTCCACAAGATCGCGTTGGACATCGC TCGTGCCCTCACCTATCTCCACGACCAGTGTGCTCCACGGATCCTCCACCGCGATGTCAAGCCTAGTAACATACTTCTCGACGATGGCTTCAACGCTTAT CTCTCCGATTTCGGACTCGCCAGACTATTGGGAACCTCCGAGACTCACGCCACGACAGGTGTTGCTGGCACTTTTGGCTACGTGGCACCGGAGTACGCAA TGACATGCCGTGTCTCCGAGAAAGCTGATGTGTACAGCTACGGAGTGGTGCTGCTAGAGCTAATATCGGACAAGAAGGCGCTCGACCCTTCGTTCTCGTC CCAGGAGAATGGTTTCAACATCGTTTCGTGGGCGTGCATGCTGCTGAGGCATGGCAGGGCCAAGGAAGTTTTCACCGCAGGGTTGTGGGAGTCGAGCCCT CACGATGATCTCGTCGAGATGCTGCACTTGGCCATCACTTGTACGGACGACACGCTATCCACGAGACCGACCATGAAGAATGTCTTGCAACGTCTGCGCC GAATCAGACCTTCTAAGCCTCATGGTGTTCCTGCTCCAGGATCTCCGGCTTTATGA
AA sequence Show only first row Show all	>Lus10036899 pacid=23171031 polypeptide=Lus10036899 locus=Lus10036899.g ID=Lus10036899.BGIv1.0 annot-version=v1.0 MKQETFFFLLLCFCSLAVCFSISESSPSPEKSALLDFKSSLSDPHGVLTTWNSDLQHCSWAGITCNSRRRVVSLKLPAGASLPCRYAFKLPTLGLRMKRL CTSGAVKGKLSPLIGKLSEIRVLSLPFNELGGEIPAEVWGLEELEVLDLEGNSFVGELPPGGFSGLRKLKVLNLGFNRIEGIVPQCFGDLRSLVTLDLRF NKLHGKVPAGVYLLKHLSLAGNNLTRDEFDQKTSGSSNARSLIADTLNRKVSPGSVHVSIRYDDASGAATTTSRRDLLENNTTMGEAGASHGLSPIEIAS VVSASAIVSVLILLVLLFFYMRKWAPNSKVQVSEPKDIIEFVNIGVPLLYGNIVLATANFSTRNCIGNGGFGATYKAEIAPGTLVAVKRLAVGRFHQGVQ QFHAEIKALGRVRHPNLVTLVGYHASETEMFLIYNYLAGGNLEAFIRGRSAATVQWKILHKIALDIARALTYLHDQCAPRILHRDVKPSNILLDDGFNAY LSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSEKADVYSYGVVLLELISDKKALDPSFSSQENGFNIVSWACMLLRHGRAKEVFTAGLWESSP HDDLVEMLHLAITCTDDTLSTRPTMKNVLQRLRRIRPSKPHGVPAPGSPAL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10036899 [exp]	0	1
					Lus10039851 [exp]	1.0	0.8189
AT1G33560		ADR1	ACTIVATED DISEASE RESISTANCE 1...		Lus10032759 [exp]	2.4	0.7938
AT4G32285			ENTH/ANTH/VHS superfamily prot...		Lus10043260 [exp]	4.9	0.8008
AT1G12710		ATPP2-A12	phloem protein 2-A12 (.1)		Lus10024494 [exp]	5.7	0.7758
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10032971 [exp]	7.5	0.7884
AT1G45063			copper ion binding;electron ca...		Lus10019405 [exp]	10.1	0.7801
AT3G22530			unknown protein		Lus10035239 [exp]	16.7	0.7207
AT3G27540			beta-1,4-N-acetylglucosaminylt...		Lus10032088 [exp]	19.2	0.7823
AT1G53590		NTMCTYPE6.1 ,NT...	Calcium-dependent lipid-bindin...		Lus10013710 [exp]	22.3	0.7262
AT2G25430			epsin N-terminal homology (ENT...		Lus10019402 [exp]	24.1	0.7790

Compare expression of checked genes

Lus10036899 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.