Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03630 74 / 6e-15 unknown protein AT5G39200 54 / 5e-08 unknown protein AT3G02125 48 / 1e-05 unknown protein AT1G74220 48 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037082 [exp] 765 / 0 AT2G03630 82 / 2e-17 unknown protein Lus10004647 [exp] 105 / 3e-24 AT2G03630 62 / 6e-11 unknown protein Lus10026665 [exp] 104 / 6e-24 AT2G03630 73 / 2e-14 unknown protein Lus10013196 [exp] 63 / 1e-10 AT3G02125 67 / 5e-13 unknown protein Lus10030710 [exp] 63 / 2e-10 AT5G39200 71 / 3e-14 unknown protein Lus10032983 [exp] 59 / 2e-09 AT3G02125 59 / 6e-10 unknown protein Lus10029645 [exp] 59 / 4e-09 AT2G03630 62 / 4e-11 unknown protein Lus10021153 [exp] 49 / 9e-06 AT5G08020 884 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G158000 [exp] 89 / 5e-19 AT2G03630 108 / 7e-27 unknown protein Potri.008G096300 [exp] 84 / 3e-17 AT2G03630 91 / 2e-20 unknown protein Potri.017G094300 [exp] 66 / 1e-11 AT5G39200 70 / 3e-14 unknown protein Potri.015G057200 [exp] 58 / 7e-09 AT1G74220 77 / 9e-16 unknown protein Potri.012G061700 [exp] 55 / 7e-08 AT1G74220 91 / 1e-20 unknown protein Potri.004G120400 [exp] 54 / 8e-08 AT5G39200 68 / 1e-13 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036900 pacid=23171105 polypeptide=Lus10036900 locus=Lus10036900.g ID=Lus10036900.BGIv1.0 annot-version=v1.0 ATGGATACCGGGCCTGAGAAAGGCAGCAGCACTAGAGATTCTGATTCTCAGAAGGAAATCAGTACTGGAGATTCTTTGACTGAAAGCAGTACTAGAGATC CTCAAACGGAAAGCAGTACCAGAGATTCTCCTTACTCACTTCCTGTTGTTGATCCGAAGGAGGTTGAACAAAACGACAACATCGAGACATATCCGAAGCT TCGTATTCGGTCTGAATTTGAGGGTTTTCCCGTAGAACTAGGCCATGATCAAACATCAAATGGGGATGAGATCAGCAGTAAGAACTCGAGTTTCGATCAC TTTGATGCTGATCCGGAGATACTCAATCCAAGGATGACTGACAGGAGCTCGGAGCCCATCAATCCAGAGGATGAGAGTTCTAGAAATGGTTCATTTAAGA TTAATTCAGGTGTGATCGCCAGCAGTGAGCACCTGGAATCACAACCTGAGACTGTTGATGATGGTGGTGGAAGTCACATTGAGGGGAGTCAGTTAAGAAC ATTGTCACAATCAGAAGATCAACCTACAGTTGAAGACAATAAACCTACGTCTCCAATCATAAAAATGGGCTCATCATCTCCATCCTCATCTTCCTCAGAA TCTTCATCGGGTAAAGGTCCTTTCCCGGGGGATTTGAACGATGACTTCGACCCTCGGAGTCCTGGCGAGGACAAAAACCTAGCAAGAGACACTATTTCTG AACAAAACAAGCCAGGGGAAGCAGAAAGCAACTCTGTTAGCCCTGTAGTCGCATCTCCTGCAGGTTCCGAGATCACTTTGTCAGGAATTTCACCTATACA ATCCCCACCGGTTCAAGTCATGCAAAGATCGGAAGGATATGACCCGGACCGGATTCCACAATCTATATTCCAGAGAAGCTCATCAGATGCACAAAACGAC TGGAGCATTGCCTCGAACGAGTCGTTGTTCAGCATCCATGTAGGAGCCAGTACTAGCTTCTCCAGAGAACAAGCAGCATTCATCAAGGCTGAAGAAGTTG TTCCCAAACAGGACGAACCTTTCTCGTTCACCCCTCGTAAGCCATCAGACGAGACCCCTGAATCTCCTACTAGTCCCGCTGCATTCCCAGTTTTGGAACT CGCTAATGCTGATGCAGTAACAGCTTCTTCCCCAGCTGTAGAGCCTCGGAAACAGAACGCCGTGACAAAGACCGAAATAATAAGTACAACTCCTGGGAAG TATCCATCCCCGGAGAGTGCCAAAAGGGCAGCAGCAGAAGAACATCGAAGTAGTAATCAAAAGAGAGCGCCAATCGTGTCATGGAGATCAAACAGCAATT CGAATTTTTCCGACAGGAGTCAGAACAGCACCAAGTCTTTTGCTTTCCCTATTTTGAATGACGATGCGAGATTAGAATCTTCCTCCACGCCCGTGAACAA GGAAGAGCAGCGTCAAGAGATGGCAACATCAGCGGCAGTTGTTGGACCTCCTCCGAGGAAGGTGAAACGTTGGTGGTACAGGTTCTTGTATTGCTGCTCG TGGAAGGGGTGCTGTTGCTGTTCTTGCAGGTGTTTTTCTTGCTCTTCTTGCAGGTGTTTTCGTTTTTCGAAATGTTGCCGTTGTTGA
AA sequence Show only first row Show all	>Lus10036900 pacid=23171105 polypeptide=Lus10036900 locus=Lus10036900.g ID=Lus10036900.BGIv1.0 annot-version=v1.0 MDTGPEKGSSTRDSDSQKEISTGDSLTESSTRDPQTESSTRDSPYSLPVVDPKEVEQNDNIETYPKLRIRSEFEGFPVELGHDQTSNGDEISSKNSSFDH FDADPEILNPRMTDRSSEPINPEDESSRNGSFKINSGVIASSEHLESQPETVDDGGGSHIEGSQLRTLSQSEDQPTVEDNKPTSPIIKMGSSSPSSSSSE SSSGKGPFPGDLNDDFDPRSPGEDKNLARDTISEQNKPGEAESNSVSPVVASPAGSEITLSGISPIQSPPVQVMQRSEGYDPDRIPQSIFQRSSSDAQND WSIASNESLFSIHVGASTSFSREQAAFIKAEEVVPKQDEPFSFTPRKPSDETPESPTSPAAFPVLELANADAVTASSPAVEPRKQNAVTKTEIISTTPGK YPSPESAKRAAAEEHRSSNQKRAPIVSWRSNSNSNFSDRSQNSTKSFAFPILNDDARLESSSTPVNKEEQRQEMATSAAVVGPPPRKVKRWWYRFLYCCS WKGCCCCSCRCFSCSSCRCFRFSKCCRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03630			unknown protein		Lus10036900 [exp]	0	1
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10014715 [exp]	9.2	0.8295
AT1G63430			Leucine-rich repeat protein ki...		Lus10008486 [exp]	10.2	0.7750
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10025789 [exp]	20.5	0.7926
AT1G68185			Ubiquitin-like superfamily pro...		Lus10034627 [exp]	22.1	0.7645
AT3G09850			D111/G-patch domain-containing...		Lus10036327 [exp]	29.8	0.7800
AT1G18835	ZF_HD	MIF3	mini zinc finger 3, mini zinc ...		Lus10002058 [exp]	29.9	0.7959
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Lus10002581 [exp]	38.4	0.7913
AT2G23790			Protein of unknown function (D...		Lus10019663 [exp]	47.7	0.7906
AT5G07120		SNX2b	sorting nexin 2B (.1)		Lus10042247 [exp]	47.9	0.7886
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10010633 [exp]	48.2	0.7675

Compare expression of checked genes

Lus10036900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.