Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03620 358 / 2e-122 AtMRS2-5, AtMGT3, MRS2-5, MGT3 magnesium transporter 3 (.1.2) AT1G16010 294 / 4e-97 AtMRS2-1, AtMGT2, MRS2-1, MGT2 magnesium transporter 2 (.1.2.3) AT1G80900 294 / 7e-97 MRS2-10, ATMGT1 magnesium transporter 1 (.1) AT5G09690 194 / 1e-59 MRS2-7, ATMGT7 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) AT3G19640 185 / 2e-54 MRS2-3, MGT4 magnesium transporter 4 (.1) AT3G58970 179 / 2e-52 MRS2-4, MGT6 magnesium transporter 6 (.1) AT5G09720 167 / 2e-49 Magnesium transporter CorA-like family protein (.1) AT5G64560 144 / 1e-39 MRS2-2, ATMGT9 magnesium transporter 9 (.1.2) AT4G28580 135 / 2e-36 MRS2-6, ATMGT5 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORT 5, magnesium transport 5 (.1) AT5G09710 83 / 7e-18 Magnesium transporter CorA-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037081 [exp] 452 / 3e-160 AT2G03620 479 / 6e-170 magnesium transporter 3 (.1.2) Lus10014353 [exp] 298 / 2e-98 AT1G16010 745 / 0.0 magnesium transporter 2 (.1.2.3) Lus10026063 [exp] 297 / 4e-98 AT1G16010 744 / 0.0 magnesium transporter 2 (.1.2.3) Lus10025531 [exp] 193 / 3e-58 AT3G19640 407 / 8e-140 magnesium transporter 4 (.1) Lus10015459 [exp] 172 / 1e-49 AT3G58970 560 / 0.0 magnesium transporter 6 (.1) Lus10021887 [exp] 152 / 1e-42 AT5G64560 574 / 0.0 magnesium transporter 9 (.1.2) Lus10024860 [exp] 149 / 1e-41 AT5G09690 478 / 3e-169 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) Lus10022218 [exp] 146 / 3e-39 AT5G09690 513 / 1e-179 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) Lus10008803 [exp] 142 / 7e-39 AT5G64560 570 / 0.0 magnesium transporter 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G158100 [exp] 443 / 7e-156 AT2G03620 417 / 2e-144 magnesium transporter 3 (.1.2) Potri.008G096200 [exp] 442 / 2e-155 AT2G03620 438 / 1e-152 magnesium transporter 3 (.1.2) Potri.003G183600 [exp] 301 / 2e-99 AT1G16010 699 / 0.0 magnesium transporter 2 (.1.2.3) Potri.001G043200 [exp] 300 / 2e-99 AT1G16010 637 / 0.0 magnesium transporter 2 (.1.2.3) Potri.009G086300 [exp] 207 / 3e-63 AT3G19640 431 / 4e-148 magnesium transporter 4 (.1) Potri.007G098200 [exp] 194 / 2e-58 AT1G80900 301 / 1e-98 magnesium transporter 1 (.1) Potri.006G081700 [exp] 172 / 1e-49 AT3G58970 538 / 0.0 magnesium transporter 6 (.1) Potri.008G161400 [exp] 160 / 8e-46 AT5G64560 552 / 0.0 magnesium transporter 9 (.1.2) Potri.010G077900 [exp] 158 / 6e-45 AT5G64560 531 / 0.0 magnesium transporter 9 (.1.2) Potri.001G291866 [exp] 114 / 3e-30 AT3G19640 167 / 3e-49 magnesium transporter 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036901 pacid=23171177 polypeptide=Lus10036901 locus=Lus10036901.g ID=Lus10036901.BGIv1.0 annot-version=v1.0 ATGGAGGAATCTCGAGGTCCACATCTGCCTACCCATAACCATGAGTCTGTCCTTAACAATGGGAGGGTCAATGTCGACGGTTGGGGAAATCGTGGCTTGT TCTTTCCTGGTTTGAGGAAACGAGGACACGGGAGTCGTTCTTGGATAAAAATTGACCCAGATGGGAGCTCTAAGATTGTGGAGCTCGATAAGTCTACTAT TATGAGACGTTGTTCTCTTCCTTCGAGAGATTTAAGACTTCTAGACCCTGTCTTTATTTATCCTTCTACCATCCTAGGACGGGAGAAGGCGATTGTGGTC AGTCTTGAACAGATTCGATGCATAATCACTGCAGATGAGGTCATCTTGATGAACTCTCTGGATAATTCTGTTGTACAGTACGAATCAGAGCTCTGCAGGC GCCTTCAGAGCAACAAAGATCAAGCTGAGGATTTGCCATTTGAATTCAGAGCTCTGGAGTTAGCTCTTGAATTGACCTGCTCATCCCTTGATTCCCAGGT AAAAGAACTGGAAATGGAGATATACCCGGTACTGGACGAATTAGCTTCATCGATTAATACTCTTAACTTGGAACGTGTACGAAGACTTAAAGGACAACTC CTTGCACTAACTCAGAGAGTTCAGAAGGTCCACGACGAGATAGAACAGCTAATGGACGACGATGGAGACATGGCTGAAATGTATCTCACGGAGAAGAAAT TGAGATTGGAAGCTTACGAGGCAGGTGACCTGGTGTCTGAAAACGATGTCTCGGACTACCCCAAAGAAGGCTCGAAATCTGCACCTTGTTCGCCAGTCAG GTCGGTCGGTGGAGGAGTCCAAAAACTTCAGAGAGCATTCAGCAGCTTTGTCACTTCGAGCAGACATGGAAGTTTGACTAGTTCGTCGAGTAACGGTGAT AACATTGTCCAACTCGAGATGTTGCTCGAGGCATACTTCGGAGCCATTGACAACACTCTTAGCAAGTTATCCTCGGTGAGTAATCTGAACAAAAGAGTGC AATTGGATTGGAGCTTATGA
AA sequence Show only first row Show all	>Lus10036901 pacid=23171177 polypeptide=Lus10036901 locus=Lus10036901.g ID=Lus10036901.BGIv1.0 annot-version=v1.0 MEESRGPHLPTHNHESVLNNGRVNVDGWGNRGLFFPGLRKRGHGSRSWIKIDPDGSSKIVELDKSTIMRRCSLPSRDLRLLDPVFIYPSTILGREKAIVV SLEQIRCIITADEVILMNSLDNSVVQYESELCRRLQSNKDQAEDLPFEFRALELALELTCSSLDSQVKELEMEIYPVLDELASSINTLNLERVRRLKGQL LALTQRVQKVHDEIEQLMDDDGDMAEMYLTEKKLRLEAYEAGDLVSENDVSDYPKEGSKSAPCSPVRSVGGGVQKLQRAFSSFVTSSRHGSLTSSSSNGD NIVQLEMLLEAYFGAIDNTLSKLSSVSNLNKRVQLDWSL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Lus10036901 [exp]	0	1
AT1G67623			F-box family protein (.1)		Lus10038709 [exp]	8.2	0.7082
AT4G18370		DEGP5, DEG5, HH...	PROTEASE HHOA PRECUSOR, DEGP p...		Lus10028120 [exp]	8.4	0.7414
AT2G03810			18S pre-ribosomal assembly pro...		Lus10036829 [exp]	10.4	0.7106
AT3G57630			exostosin family protein (.1.2...		Lus10026311 [exp]	12.0	0.6482
AT2G33710	AP2_ERF		Integrase-type DNA-binding sup...		Lus10016245 [exp]	17.0	0.5442
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Lus10036028 [exp]	21.6	0.6262
AT4G28450			nucleotide binding;protein bin...		Lus10015673 [exp]	23.7	0.6455
					Lus10000810 [exp]	23.9	0.5897
AT1G72770		HAB1	HYPERSENSITIVE TO ABA1, homolo...		Lus10026447 [exp]	24.2	0.6155
AT5G62500		ATEB1B	end binding protein 1B (.1)		Lus10024235 [exp]	25.1	0.6484

Compare expression of checked genes

Lus10036901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.