Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13750 198 / 2e-59 Purple acid phosphatases superfamily protein (.1) AT5G50400 195 / 2e-58 ATPAP27, PAP27 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) AT4G24890 194 / 4e-58 ATPAP24, PAP24 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) AT2G03620 69 / 3e-13 AtMRS2-5, AtMGT3, MRS2-5, MGT3 magnesium transporter 3 (.1.2) AT1G13900 54 / 4e-08 Purple acid phosphatases superfamily protein (.1) AT2G03450 52 / 1e-07 PAP9, ATPAP9 purple acid phosphatase 9 (.1) AT1G13760 39 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037080 [exp] 239 / 1e-75 AT5G50400 605 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10037079 [exp] 207 / 8e-63 AT1G13750 928 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10036904 [exp] 206 / 2e-62 AT1G13750 928 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10012144 [exp] 194 / 4e-58 AT5G50400 885 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10037081 [exp] 149 / 7e-43 AT2G03620 479 / 6e-170 magnesium transporter 3 (.1.2) Lus10019771 [exp] 74 / 7e-15 AT5G50400 317 / 4e-100 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10024179 [exp] 74 / 9e-15 AT5G50400 331 / 3e-105 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10039565 [exp] 74 / 1e-14 AT5G50400 362 / 6e-117 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10016356 [exp] 69 / 3e-13 AT4G24890 332 / 7e-106 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G158250 [exp] 224 / 4e-69 AT1G13750 967 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.010G158400 [exp] 220 / 8e-68 AT1G13750 962 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.008G096000 [exp] 210 / 6e-64 AT1G13750 927 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.012G097400 [exp] 210 / 7e-64 AT5G50400 947 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.015G095900 [exp] 198 / 2e-59 AT5G50400 838 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.008G096200 [exp] 82 / 7e-18 AT2G03620 438 / 1e-152 magnesium transporter 3 (.1.2) Potri.010G158100 [exp] 80 / 5e-17 AT2G03620 417 / 2e-144 magnesium transporter 3 (.1.2) Potri.003G202200 [exp] 69 / 3e-13 AT5G50400 359 / 8e-116 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.001G023400 [exp] 69 / 3e-13 AT5G50400 345 / 1e-110 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.010G160500 [exp] 54 / 5e-08 AT1G13900 903 / 0.0 Purple acid phosphatases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036902 pacid=23171311 polypeptide=Lus10036902 locus=Lus10036902.g ID=Lus10036902.BGIv1.0 annot-version=v1.0 ATGGGAAGAGAATGGCTTCAAAAGCTCTGGCAGAAGTATAAGGTTGATATTGCCATATTTGGCCATGTCCACAACTATGAAAGAACCTGCCCTGTCTATG AGAACATATGCACCAGAGAAGAAAAGAACTACTACCAGGGAGCACTCAATGGTACGATCCATGTCATTGCTGGAGGTACAGGAGCATCGTTGTCCATGTT TTCTCCAGTTCATCCGAAATGGAGTTTATATAGGGACTTTGATCATGGATTTGTGAAGCTCACGGCACAAAATCGTTCTGATCTGTTGTTTGAGTATAAG AAGAGTAGAGATGAGAAGGTCTATGATTCTTTCAGAATCTCCAGAGATTATAGGGACATCTTGGCTTGCACTGTTGATAGCTGTCCAAGAACAACACTAG CACTTGACCTTCTCAAACGAAGAATCATCAATAAATTGGGAAATTTTAACAGATGTTCATCCTTGAATGAAGTTTACTATTCAACTTACAGAGTTGTTAT TTTTTCACAGTGGCAAGACTTTCTTGTGCCTGAAGTAGAACAAGAAAGACATGTACATGAAACAACAGGCCACACCTGTTATGATCAGGACCCAATGGAA AGTTGCAGGATTTTCGAAAACCGAGTCCTCGAAGTTCATCCCGAACACTCCTGTCACGACAGCAAACACCGTGGCCACAAAGGTTGCTGCTGTAAGCAGC AGCTCGAACTGAATGAGCTGGTTCTGGATATTTCGCCGACAGATAAACAGACAAGAAAGTTTTAG
AA sequence Show only first row Show all	>Lus10036902 pacid=23171311 polypeptide=Lus10036902 locus=Lus10036902.g ID=Lus10036902.BGIv1.0 annot-version=v1.0 MGREWLQKLWQKYKVDIAIFGHVHNYERTCPVYENICTREEKNYYQGALNGTIHVIAGGTGASLSMFSPVHPKWSLYRDFDHGFVKLTAQNRSDLLFEYK KSRDEKVYDSFRISRDYRDILACTVDSCPRTTLALDLLKRRIINKLGNFNRCSSLNEVYYSTYRVVIFSQWQDFLVPEVEQERHVHETTGHTCYDQDPME SCRIFENRVLEVHPEHSCHDSKHRGHKGCCCKQQLELNELVLDISPTDKQTRKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13750			Purple acid phosphatases super...		Lus10036902 [exp]	0	1
AT2G17787			unknown protein		Lus10013567 [exp]	1.0	0.9343
AT5G06830			unknown protein		Lus10016277 [exp]	2.0	0.9243
AT1G10320	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10010687 [exp]	3.9	0.8764
AT2G45200		ATGOS12, GOS12	golgi snare 12 (.1.2)		Lus10009285 [exp]	4.7	0.8839
AT5G37590			Tetratricopeptide repeat (TPR)...		Lus10020809 [exp]	5.0	0.8997
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Lus10025203 [exp]	5.1	0.8780
AT3G05580		TOPP9	type one protein phosphatase 9...		Lus10031489 [exp]	6.6	0.9100
AT5G10530			Concanavalin A-like lectin pro...		Lus10033779 [exp]	7.1	0.8717
AT5G62670		AHA11	H\(+\)-ATPase 11, H\(+\)-ATPas...		Lus10028203 [exp]	7.3	0.9142
AT4G07990			Chaperone DnaJ-domain superfam...		Lus10012482 [exp]	8.9	0.8681

Compare expression of checked genes

Lus10036902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.