Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13750 508 / 5e-177 Purple acid phosphatases superfamily protein (.1) AT5G50400 478 / 5e-165 ATPAP27, PAP27 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) AT4G24890 474 / 1e-163 ATPAP24, PAP24 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) AT1G13900 145 / 1e-37 Purple acid phosphatases superfamily protein (.1) AT2G03450 138 / 2e-35 PAP9, ATPAP9 purple acid phosphatase 9 (.1) AT3G52780 67 / 6e-12 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT4G13700 66 / 2e-11 ATPAP23, PAP23 purple acid phosphatase 23 (.1) AT3G52820 63 / 2e-10 ATPAP22, PAP22 purple acid phosphatase 22 (.1) AT3G07130 61 / 7e-10 ATPAP15, PAP15 purple acid phosphatase 15 (.1) AT3G52810 61 / 8e-10 ATPAP21, PAP21 purple acid phosphatase 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037080 [exp] 561 / 0 AT5G50400 605 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10036904 [exp] 547 / 0 AT1G13750 928 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10037079 [exp] 545 / 0 AT1G13750 928 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10012144 [exp] 453 / 2e-155 AT5G50400 885 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10039565 [exp] 196 / 3e-56 AT5G50400 362 / 6e-117 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10024179 [exp] 188 / 3e-53 AT5G50400 331 / 3e-105 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10016356 [exp] 184 / 9e-52 AT4G24890 332 / 7e-106 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) Lus10019771 [exp] 177 / 1e-49 AT5G50400 317 / 4e-100 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10019772 [exp] 177 / 2e-48 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G158250 [exp] 600 / 0 AT1G13750 967 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.010G158400 [exp] 560 / 0 AT1G13750 962 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.008G096000 [exp] 553 / 0 AT1G13750 927 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.015G095900 [exp] 499 / 2e-173 AT5G50400 838 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.012G097400 [exp] 479 / 3e-165 AT5G50400 947 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.003G202200 [exp] 194 / 3e-55 AT5G50400 359 / 8e-116 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.001G023400 [exp] 192 / 1e-54 AT5G50400 345 / 1e-110 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.010G160500 [exp] 139 / 2e-35 AT1G13900 903 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.017G055900 [exp] 66 / 2e-11 AT3G07130 816 / 0.0 purple acid phosphatase 15 (.1) Potri.003G176000 [exp] 65 / 4e-11 AT4G13700 739 / 0.0 purple acid phosphatase 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10036903 pacid=23171028 polypeptide=Lus10036903 locus=Lus10036903.g ID=Lus10036903.BGIv1.0 annot-version=v1.0 ATGGCTAGACCTGGATCATCCATCGTCTTCCCAGCAATCCTCCTTCTTTGCTTCGCTACTTTGCTTCCGGAAACCCGGTCCCATGGAGCTGATCATCCAT TCTCCAGAATCGCCATTCACAGGACAGTTTCTGCTTTCACTGACCTTGCCTACCTCAAAGCCTCTCCTTCCGTTCTTAGCCGCAGTTCTTCGGATTGGGT GACTGTTGACTACACCTCTCCGATCCCATCAGTTGATGATTGGATTGGTGTATTCTCTCCTGCCAATTTCAGCGCTGAAACTTGCCCTTCTGAGAATCCA AGAGCCTTTCCTCCGTTGTTGTGTACAGCTCCAATCAGGTTGCATCTGAAAAGCAGCAGTATTATCAAAGTGAATTCATTTAACAATGAACAATCTGTGT TTTTCGAGCCTGAGAATTTAACAATGAACAATCCGCGTCTGGCACAAGGGAAGGAGTGGAATGAAATGACTGTAACATGGACGAGCGGGTATGGAATCGT TGACGCAGAACCTTTTGTTGAATGGGGTCCTGAAAAAGAAGAAGGAGATGATCATCTAATCCATTCCCCAGCCGTGGCACTGACTTTCGATAGAAGCAAC ATGTGTGGTGCTCCTGCAAGAACGGTAGGGTGGCCAGATCCTGGATATATCCATACCAGCTTTCTGAAGGAACTGTACACCTACAAGCTGGGTCACAGAT TGCTCAATGGCACACATATCTCGAGCTGTAGTTACCAGTTTCGGTCATCTCCTTACCCTGGACAAGCTTCGCCACAACGAGTAGTCATTTTCGGCGACAT GGAAAAGGGAGAAGCAGATGGTTCGAGTGAGTATAACGACTTTCAACCCGGATCTCTGAACACCACGAGACAGATCGTCCAGGACCTGGAAAACATTGAT ATAGTTTTCCACATTGGAGATTTATACTATGCTAACGGATACTTGCCACAGTGGGATCAGTTCACTTCACAAATCGAGCCAATCGCATCAATAGTTCCTT ACATGGTTGGCAGTGGGAATCATGAGCATGACAGGCCTGGGACAGGATCGTTCTATGGAAGCATGGATTCTGGGGGAGAGTGTGGAGTTCTGGCTCAGAC GATGTTCTATGTCCCAGCAGATAACCAGGCCAAGTTCTGGTATAAAACAGACTTTGGGATGTTCAGATTCTGCATAGCTGACACAGAACAGGACTGGAGA GAAGGAACAGAGCAGTACGAGTTTATCGAACATTGCCTAGCATCAGTTGACAGGAGAAAACAGCCGTGGCTTGTATTCTCGCACACCACGTGCTAG
AA sequence Show only first row Show all	>Lus10036903 pacid=23171028 polypeptide=Lus10036903 locus=Lus10036903.g ID=Lus10036903.BGIv1.0 annot-version=v1.0 MARPGSSIVFPAILLLCFATLLPETRSHGADHPFSRIAIHRTVSAFTDLAYLKASPSVLSRSSSDWVTVDYTSPIPSVDDWIGVFSPANFSAETCPSENP RAFPPLLCTAPIRLHLKSSSIIKVNSFNNEQSVFFEPENLTMNNPRLAQGKEWNEMTVTWTSGYGIVDAEPFVEWGPEKEEGDDHLIHSPAVALTFDRSN MCGAPARTVGWPDPGYIHTSFLKELYTYKLGHRLLNGTHISSCSYQFRSSPYPGQASPQRVVIFGDMEKGEADGSSEYNDFQPGSLNTTRQIVQDLENID IVFHIGDLYYANGYLPQWDQFTSQIEPIASIVPYMVGSGNHEHDRPGTGSFYGSMDSGGECGVLAQTMFYVPADNQAKFWYKTDFGMFRFCIADTEQDWR EGTEQYEFIEHCLASVDRRKQPWLVFSHTTC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13750			Purple acid phosphatases super...		Lus10036903 [exp]	0	1
AT2G23790			Protein of unknown function (D...		Lus10019663 [exp]	6.6	0.8528
AT4G13700		ATPAP23, PAP23	purple acid phosphatase 23 (.1...		Lus10028533 [exp]	7.3	0.8217
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Lus10023058 [exp]	15.7	0.7963
AT1G03250			unknown protein		Lus10012370 [exp]	25.1	0.8070
AT1G78070			Transducin/WD40 repeat-like su...		Lus10041102 [exp]	26.0	0.8143
AT1G13750			Purple acid phosphatases super...		Lus10036902 [exp]	29.6	0.8085
AT1G75380		ATBBD1	bifunctional nuclease in basal...		Lus10024277 [exp]	30.4	0.8027
AT5G40870		UKL1, ATUK/UPRT...	URIDINE KINASE-LIKE 1, uridine...		Lus10041569 [exp]	35.5	0.7818
AT4G36980			unknown protein		Lus10009350 [exp]	43.6	0.7903
AT1G10320	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10010687 [exp]	48.6	0.7852

Compare expression of checked genes

Lus10036903 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.