Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13750 928 / 0 Purple acid phosphatases superfamily protein (.1) AT5G50400 899 / 0 ATPAP27, PAP27 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) AT4G24890 865 / 0 ATPAP24, PAP24 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) AT1G13900 213 / 2e-60 Purple acid phosphatases superfamily protein (.1) AT2G03450 207 / 3e-58 PAP9, ATPAP9 purple acid phosphatase 9 (.1) AT3G52780 110 / 1e-25 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT4G13700 106 / 4e-24 ATPAP23, PAP23 purple acid phosphatase 23 (.1) AT3G52810 102 / 7e-23 ATPAP21, PAP21 purple acid phosphatase 21 (.1) AT3G52820 99 / 6e-22 ATPAP22, PAP22 purple acid phosphatase 22 (.1) AT3G07130 94 / 4e-20 ATPAP15, PAP15 purple acid phosphatase 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037079 [exp] 1239 / 0 AT1G13750 928 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10012144 [exp] 868 / 0 AT5G50400 885 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10037080 [exp] 642 / 0 AT5G50400 605 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10036903 [exp] 536 / 0 AT1G13750 508 / 7e-177 Purple acid phosphatases superfamily protein (.1) Lus10039565 [exp] 333 / 7e-106 AT5G50400 362 / 6e-117 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10016356 [exp] 315 / 5e-99 AT4G24890 332 / 7e-106 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) Lus10019771 [exp] 307 / 2e-96 AT5G50400 317 / 4e-100 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10024179 [exp] 304 / 5e-95 AT5G50400 331 / 3e-105 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10019772 [exp] 268 / 5e-78 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G158400 [exp] 1070 / 0 AT1G13750 962 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.008G096000 [exp] 1009 / 0 AT1G13750 927 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.010G158250 [exp] 1002 / 0 AT1G13750 967 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.015G095900 [exp] 910 / 0 AT5G50400 838 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.012G097400 [exp] 907 / 0 AT5G50400 947 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.003G202200 [exp] 335 / 6e-107 AT5G50400 359 / 8e-116 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.001G023400 [exp] 330 / 1e-104 AT5G50400 345 / 1e-110 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.010G160500 [exp] 208 / 6e-59 AT1G13900 903 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.017G055900 [exp] 111 / 1e-25 AT3G07130 816 / 0.0 purple acid phosphatase 15 (.1) Potri.002G243900 [exp] 105 / 8e-24 AT3G07130 805 / 0.0 purple acid phosphatase 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10036904 pacid=23171020 polypeptide=Lus10036904 locus=Lus10036904.g ID=Lus10036904.BGIv1.0 annot-version=v1.0 ATGATATTAGCTGTAGTCTTACTGTTCCTTGCGACTCTGCAACGATCATCTTCTCATGGAGACCATCCCTTGGCTAAGATTGCCATCCACGAGACCAGAT TTGCTCTTGAAGATGCCGCTTCTATTAGAGCTTCTCCTGCTGGCCTTGGCCTTCAGGGGCAGAATTCTGAGTGGGTGACTTTGAGATTCACTTCAGAAAA CCCGTCAAACGATGATTGGATTGGAGTGTTCTCTCCTGCTAATTTTAGTGCTGCCATTTGCGATTCGGAAGGTTCAAAGGCAGCTCCTCCATTGTTGTGC ACTGCACCAATCAAGTATCAGTATGCAAACTACAGCAGTCCTAGTTACAAAAACTCTGGGAAAGGATCGCTGAGGCTTCAGTTGATTAACCAAAGATCAG ACTTCTCATTTGCACTGTTTTCTGGCGGTTTATCCAAGCCTAAGCTAGTGGCCTTGTCCAACAAGGTCGCCTTTGCAAACCCAAATGCACCGCTTTACCC ACGCTTAGCCCAAGGAAAGACATGGAATGAAATGACTGTGACTTGGACAAGTGGTTATGGGATTGGTGTTGCGGAGCCTTTTATTGAATGGGGTCAGAAA GGAGGTCCTTTTGTTCGTTCCCCGGCTGGCACACTCACCATTGATCGTAGCAGTATGTGTGGTCCCCCGGCAAGAACAGTAGGGTGGCGTGATCCTGGAT TCATCCACACCAGTTTTCTTAAGGAGCTATGGCCAAACACGCTATATACTTACAAGCTTGGACATAAGTTGTTCAATGGAACCTACATTTGGAGCTCAGA ATATGACTTCAGAGCATCTCCATATCCTGGCCAAGATTCCGTACAGCGGGTCATCATATTCGGTGACATGGGAAAGGATGAGGCAGATGGATCGAATGAA TATAACAATTACCAGCACGGTGCGCTGAACACTACCAAACAGCTAGTTAACGACTTGAAAAACATCGATATTGTCTTCCATATCGGAGATATTGTGTATG CAAACGGGTATCTTTCACAATGGGACCAATTCACTGCACAGGTGGCACCCATTACGTCGAAAGTTCCTTACATGGTTGCAAGCGGTAACCATGAACGAGA CTGGCCGGGGACAGGATCCTTCTACGGGACCAAAGATTCCGGAGGAGAATGCGGTGTGATGGCCGAGACAATGTTCTATGTACCAGCCGAGAACAGGGCT AAGTTCTGGTACTCTACCGACTACGGAATGTTCCATTTTTGCATAGCTGACACTGAACACGATTGGAGGGAAGGAACTGAGCAGTACGAGTTCATCGAGC GGTGCTTTGCCTCTGTCGATAGGCGAAAGCAGCCGTGGCTTATCTTCATAGCGCACCGTGTACTAGGCTATTCGTCTGGATCCTGGTACGCTGAGCAAGG GTCGTTCGAGGAACCTATGGGACGGGAGAGTCTTCAGAAGCTGTGGCAGAAGTATAAGGTTGACATAGCTGTCTATGGCCACGTGCACAACTATGAGAGG ACTTGTCCCATTTACCAGAACATCTGCCTGGACAAAGAGAAGTACAACTACAAGGGACCCTTTAACGGGACAATCCACGTCGTGGCGGGAGGAGGAGGAT CGGGGCTGGCCGATTTTACCCCACTGAACACAACCTGGAGTCTGTTCAAAGACCATGACTATGGGTTCGTAAAGCTCACTGCATTTGACCACTCGAACCT GTTGTTCGAGTACAAGAAGAGCAGTGACGGTAAGGTCTACGATTCGTTCACGATCTCGAGGGATTACAGAGACATCTTGGCCTGCAGTGTTGATAATTGT TCCCCTACAACCATGGCATCTTAG
AA sequence Show only first row Show all	>Lus10036904 pacid=23171020 polypeptide=Lus10036904 locus=Lus10036904.g ID=Lus10036904.BGIv1.0 annot-version=v1.0 MILAVVLLFLATLQRSSSHGDHPLAKIAIHETRFALEDAASIRASPAGLGLQGQNSEWVTLRFTSENPSNDDWIGVFSPANFSAAICDSEGSKAAPPLLC TAPIKYQYANYSSPSYKNSGKGSLRLQLINQRSDFSFALFSGGLSKPKLVALSNKVAFANPNAPLYPRLAQGKTWNEMTVTWTSGYGIGVAEPFIEWGQK GGPFVRSPAGTLTIDRSSMCGPPARTVGWRDPGFIHTSFLKELWPNTLYTYKLGHKLFNGTYIWSSEYDFRASPYPGQDSVQRVIIFGDMGKDEADGSNE YNNYQHGALNTTKQLVNDLKNIDIVFHIGDIVYANGYLSQWDQFTAQVAPITSKVPYMVASGNHERDWPGTGSFYGTKDSGGECGVMAETMFYVPAENRA KFWYSTDYGMFHFCIADTEHDWREGTEQYEFIERCFASVDRRKQPWLIFIAHRVLGYSSGSWYAEQGSFEEPMGRESLQKLWQKYKVDIAVYGHVHNYER TCPIYQNICLDKEKYNYKGPFNGTIHVVAGGGGSGLADFTPLNTTWSLFKDHDYGFVKLTAFDHSNLLFEYKKSSDGKVYDSFTISRDYRDILACSVDNC SPTTMAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13750			Purple acid phosphatases super...		Lus10036904 [exp]	0	1
AT5G50460			secE/sec61-gamma protein trans...		Lus10012539 [exp]	1.4	0.8613
AT5G47060			Protein of unknown function (D...		Lus10019494 [exp]	2.2	0.8829
AT1G70780			unknown protein		Lus10031920 [exp]	3.2	0.8422
AT5G25450			Cytochrome bd ubiquinol oxidas...		Lus10013113 [exp]	4.2	0.8579
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Lus10023113 [exp]	5.2	0.7832
AT5G25450			Cytochrome bd ubiquinol oxidas...		Lus10008081 [exp]	6.0	0.8496
AT4G30960		CIPK6, SIP3, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10021852 [exp]	6.5	0.8284
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10001927 [exp]	8.8	0.8085
AT5G20050			Protein kinase superfamily pro...		Lus10033032 [exp]	9.3	0.7404
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10003077 [exp]	9.5	0.8312

Compare expression of checked genes

Lus10036904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.