Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22660 54 / 1e-08 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) AT5G22700 52 / 6e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G22000 51 / 7e-08 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT5G53840 50 / 1e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) AT2G04230 50 / 1e-07 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT1G66290 50 / 2e-07 F-box/RNI-like superfamily protein (.1) AT2G39415 47 / 2e-07 F-box family protein (.1) AT3G49030 49 / 4e-07 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) AT1G60400 49 / 4e-07 F-box/RNI-like superfamily protein (.1) AT1G13780 49 / 4e-07 F-box/RNI-like/FBD-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003696 [exp] 119 / 1e-33 AT3G51530 52 / 1e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10029003 [exp] 120 / 4e-32 AT3G49030 57 / 3e-08 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Lus10029083 [exp] 111 / 7e-29 AT1G67390 54 / 6e-08 F-box family protein (.1) Lus10037289 [exp] 110 / 2e-28 AT5G02920 61 / 4e-10 F-box/RNI-like superfamily protein (.1) Lus10034290 [exp] 107 / 1e-27 AT5G02910 53 / 2e-07 F-box/RNI-like superfamily protein (.1.2) Lus10037261 [exp] 94 / 4e-24 AT5G02920 65 / 1e-12 F-box/RNI-like superfamily protein (.1) Lus10028939 [exp] 91 / 6e-22 AT3G29170 80 / 3e-18 Eukaryotic protein of unknown function (DUF872) (.1) Lus10019167 [exp] 67 / 2e-14 ND 45 / 3e-06 Lus10027471 [exp] 68 / 9e-14 AT5G22730 55 / 2e-08 F-box/RNI-like/FBD-like domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G146500 [exp] 53 / 2e-08 AT5G02920 64 / 2e-11 F-box/RNI-like superfamily protein (.1) Potri.013G146800 [exp] 52 / 6e-08 AT1G69630 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Potri.011G098700 [exp] 50 / 2e-07 AT1G80960 86 / 6e-18 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) Potri.001G322900 [exp] 47 / 2e-06 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.015G011200 [exp] 46 / 3e-06 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.017G146400 [exp] 46 / 4e-06 AT3G28410 79 / 2e-15 F-box/RNI-like superfamily protein (.1) Potri.014G039700 [exp] 45 / 1e-05 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.011G024200 [exp] 45 / 1e-05 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.015G002001 [exp] 44 / 2e-05 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G104100 [exp] 44 / 2e-05 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036905 pacid=23171122 polypeptide=Lus10036905 locus=Lus10036905.g ID=Lus10036905.BGIv1.0 annot-version=v1.0 ATGTCACTGGGCGCCGTCGACCGAATCTCGGAACTACCGGAAGAGATCATCAATCCCATCCTTCAAAACTTACCCTCTCATGAGGAAGCAGCGAGAACCA GCATCTTGTCAAGAAGATGGCTCCAGCTATGGCTCTCTTACCCCGTCATGGAGTTTGACAATGGAGGGAGCGTAAACTTTGAGAGACTTGCCTCCGCCAC TTCCAAGAGACTGCAGCTAGCAGCATCGCCGTTACTTTTGGACACATTTACCATAACACTGGGGCTCCCGAGATACTTAATACTCAGTCGTCAGGAGAAA CTCCAACAACAGTTGCGATATGGCAAAAACCTTGGCGGCTTTCTTGGCCCGCTGCTGTCATCGGCCAGCAGCCGATCTCCGCTTAAGGTTGTGGTTAAAA ATTATTTCGATTTCGCTGGTTCCCTTAATTCAGGATTCCTCGTGAATTGTGGTCGAGGATTGTTCTTGAATTGCGGCCTCACCAAATTCCTCTACCTAAG AGGTTGCGACCTTGTGCAGTTCTGA
AA sequence Show only first row Show all	>Lus10036905 pacid=23171122 polypeptide=Lus10036905 locus=Lus10036905.g ID=Lus10036905.BGIv1.0 annot-version=v1.0 MSLGAVDRISELPEEIINPILQNLPSHEEAARTSILSRRWLQLWLSYPVMEFDNGGSVNFERLASATSKRLQLAASPLLLDTFTITLGLPRYLILSRQEK LQQQLRYGKNLGGFLGPLLSSASSRSPLKVVVKNYFDFAGSLNSGFLVNCGRGLFLNCGLTKFLYLRGCDLVQF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22660			FBD, F-box, Skp2-like and Leuc...		Lus10036905 [exp]	0	1
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10022741 [exp]	5.2	0.7489
AT5G61120			unknown protein		Lus10030998 [exp]	8.1	0.7685
AT2G19930			RNA-dependent RNA polymerase f...		Lus10012965 [exp]	9.2	0.8139
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10043153 [exp]	14.3	0.7731
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Lus10036268 [exp]	15.4	0.7783
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10009874 [exp]	17.5	0.8052
AT1G10380			Putative membrane lipoprotein ...		Lus10036906 [exp]	34.6	0.7380
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10038880 [exp]	45.0	0.7470
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10042646 [exp]	50.8	0.7440
AT2G32010		CVL1	CVP2 like 1 (.1.2)		Lus10039352 [exp]	52.2	0.7428

Compare expression of checked genes

Lus10036905 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.