Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10380 109 / 1e-28 Putative membrane lipoprotein (.1) AT5G50290 84 / 3e-19 unknown protein AT3G17350 82 / 3e-18 unknown protein AT1G11915 74 / 4e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037078 [exp] 390 / 2e-137 AT1G10380 170 / 6e-50 Putative membrane lipoprotein (.1) Lus10036687 [exp] 134 / 2e-38 AT1G10380 316 / 2e-108 Putative membrane lipoprotein (.1) Lus10037235 [exp] 128 / 9e-36 AT1G10380 318 / 5e-109 Putative membrane lipoprotein (.1) Lus10042105 [exp] 92 / 7e-22 AT5G50290 366 / 9e-128 unknown protein Lus10001236 [exp] 91 / 1e-21 AT5G50290 368 / 2e-128 unknown protein Lus10043098 [exp] 91 / 2e-21 AT3G17350 334 / 7e-115 unknown protein Lus10037236 [exp] 84 / 2e-20 AT1G10380 109 / 6e-36 Putative membrane lipoprotein (.1) Lus10036702 [exp] 70 / 6e-15 AT1G10380 110 / 4e-30 Putative membrane lipoprotein (.1) Lus10023362 [exp] 71 / 4e-14 AT1G11915 360 / 2e-124 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G095900 [exp] 282 / 6e-96 AT1G10380 158 / 2e-46 Putative membrane lipoprotein (.1) Potri.010G158500 [exp] 279 / 1e-94 AT1G10380 164 / 1e-48 Putative membrane lipoprotein (.1) Potri.007G094800 [exp] 144 / 6e-42 AT1G10380 125 / 1e-33 Putative membrane lipoprotein (.1) Potri.010G040500 [exp] 143 / 2e-41 AT1G10380 337 / 2e-116 Putative membrane lipoprotein (.1) Potri.008G099800 [exp] 88 / 1e-20 AT3G17350 332 / 2e-114 unknown protein Potri.015G078700 [exp] 88 / 1e-20 AT5G50290 387 / 4e-136 unknown protein Potri.010G152900 [exp] 87 / 3e-20 AT3G17350 339 / 4e-117 unknown protein Potri.011G007900 [exp] 75 / 1e-15 AT1G11915 379 / 6e-132 unknown protein Potri.004G007400 [exp] 75 / 1e-15 AT1G11915 360 / 1e-124 unknown protein Potri.005G021300 [exp] 56 / 2e-09 AT5G02070 130 / 5e-35 Protein kinase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036906 pacid=23171104 polypeptide=Lus10036906 locus=Lus10036906.g ID=Lus10036906.BGIv1.0 annot-version=v1.0 ATGTGGCAACCCTCCAGGATCTTCATCCATGGCGTCCTACTTTGTCTTCTCCCCTTCCTCTCTACTGCCTTCCGACCAGGACCGGTAAACGGTACATGCC ACGGCACGTGTGGGTCGATACCAGTGAAGTTCCCCTTCGGCAGTGGTTATGGATGTGGCCACCCTGATTTCGGTAAGTACGTAAGGTGCAACTCGGGTGC ATTAGAGCTCTCGACTGGAACCGGCATTTACACCATCTCTTCAATCGACTATCCGAGCAGCACCTTGATTATCGCGGACCCTCTGATGTCCACGTGCAGT TCGATGCAGAACTCCGGCAGCTTCATCCTAGATGGAGCCAGTCCGTTTACATTAACACGGGATAACAACATATTCGCTCTGCTTGGATGCTCCACTACTT CTCCTGTGTTCGACCCCAGCGAGGATTTGTGCAAGAAAGGGTCGGGCTCTCGCGTCTGTAGAGGAATGTACTCTTGCCCGGGAATCTCGGGGATTGGTTT GCCGCGGAATGCTGCACCGGCATCAACATGCTGTGTTTACGACTCGCCTATTCAATTTTCCGCAGGGTACGACTTGGATCTCCCCAAGCTTCAGTGCTCC TCGTATACTTCAATTTACAGCTACGGAGGCAGTGAGGGTGATCCGATGAAGTGGAAGTACGGGCGGGAAGTGCGGAATCTCGCTGCAGTATAA
AA sequence Show only first row Show all	>Lus10036906 pacid=23171104 polypeptide=Lus10036906 locus=Lus10036906.g ID=Lus10036906.BGIv1.0 annot-version=v1.0 MWQPSRIFIHGVLLCLLPFLSTAFRPGPVNGTCHGTCGSIPVKFPFGSGYGCGHPDFGKYVRCNSGALELSTGTGIYTISSIDYPSSTLIIADPLMSTCS SMQNSGSFILDGASPFTLTRDNNIFALLGCSTTSPVFDPSEDLCKKGSGSRVCRGMYSCPGISGIGLPRNAAPASTCCVYDSPIQFSAGYDLDLPKLQCS SYTSIYSYGGSEGDPMKWKYGREVRNLAAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10380			Putative membrane lipoprotein ...		Lus10036906 [exp]	0	1
AT4G32570	ZIM	TIFY8	TIFY domain protein 8 (.1)		Lus10008101 [exp]	1.4	0.8412
AT3G22810			Plant protein of unknown funct...		Lus10009509 [exp]	13.6	0.8156
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10018655 [exp]	16.1	0.8376
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10007719 [exp]	16.6	0.8248
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Lus10036268 [exp]	17.0	0.8015
AT3G56690		CIP111	Cam interacting protein 111 (....		Lus10002639 [exp]	19.0	0.7810
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Lus10040137 [exp]	19.8	0.7894
AT5G15080			Protein kinase superfamily pro...		Lus10030796 [exp]	19.9	0.8173
AT2G23950			Leucine-rich repeat protein ki...		Lus10015484 [exp]	21.5	0.8066
AT1G79020			Enhancer of polycomb-like tran...		Lus10033318 [exp]	23.2	0.7626

Compare expression of checked genes

Lus10036906 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.