Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69290 365 / 1e-120 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G68980 332 / 4e-108 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G03100 112 / 1e-26 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 75 / 3e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G16880 68 / 4e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 66 / 3e-11 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53700 66 / 3e-11 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G54980 61 / 1e-09 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12620 59 / 3e-09 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G39230 59 / 4e-09 LOJ LATERAL ORGAN JUNCTION (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037077 [exp] 535 / 0 AT1G69290 827 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020775 [exp] 110 / 1e-25 AT1G03100 961 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007353 [exp] 109 / 2e-25 AT1G03100 1003 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 71 / 8e-13 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 71 / 9e-13 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 69 / 2e-12 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006373 [exp] 63 / 3e-10 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013077 [exp] 62 / 6e-10 AT5G40400 587 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012268 [exp] 61 / 8e-10 AT5G42310 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G095800 [exp] 396 / 1e-132 AT1G69290 860 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G212400 [exp] 110 / 6e-26 AT1G03100 1044 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G257300 [exp] 65 / 6e-11 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G015900 [exp] 62 / 5e-10 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G242500 [exp] 61 / 6e-10 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G038400 [exp] 60 / 2e-09 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.001G139200 [exp] 60 / 3e-09 AT1G52620 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G035700 [exp] 60 / 3e-09 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.004G013300 [exp] 59 / 3e-09 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G069600 [exp] 59 / 4e-09 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10036908 pacid=23171324 polypeptide=Lus10036908 locus=Lus10036908.g ID=Lus10036908.BGIv1.0 annot-version=v1.0 ATGTTGTCGAGAGCAGCATTATCATCGTTTCAACAGCGACGGTTCTCCCCCGAAGCTGCTTCCACCTTATACTCCTTCCTACAGCCTTCCATCTTCGCCG TCAAGCGAACCCCTACTCCAGCAGCCACCGCCGCCGACGAGTCTGCCGACAACAAAAGCCTTGACCAACGACCAGGTGACCCAATTCGAATCCGCCATCC AAAAGTCAATCCTCACGAACGAAACCGACGAAGCATGGAAGTCATTCAAACCCCTCACGTCAAACTCTGCTGCCCTCCCCAGGCTTTCGCTTCCCTCGTT TATTTCGTGGAAAAGGTCTCGACTTTCATCAATTTCGCCACTATTCGTACTGTTCTACACTCCATGTTACGTGCCAACACAGCTGCCCCTGCATTTGCCT TGATCAAGTCTTTAGAAGGTTGCTGCAAGGAGCTCGAATTGGTTCGTGATGCTGAGTGTGTAGTCGAGACAATGTCGGTCTTGGGAGTTAGACCTGATGA GGTTAGCTTTGGGTTTCTTGCTTATTTGTATGCGTTGAAAGGGGATTCAGTGAAGATAGACGAGCTCAAGGAGTTGAGAAAGGGATTTGGTTTTGTCAAC AGTAGTTTGATCGGAGGGTACGTGAGATCGGGCAACTTGGAAGCTGTTTCGGATACGATTCTAAGTTGTTACGATGTGAATTTTAGTAGGGAGACGTTCT GTGAAGTGATCAACGGGTTTATGAAACACGGGAGTGTTAATGATTTAGCGAAATTGATCGTTGAAGCTCAGAAACTGGAGTCAACGAGTGATGTGGTCGA AGTTGAAAGATTGATTGGTTTTGGCGTTATTGATGCTTGTGTTAGTCTTGGATTTTCAGATAAGGCGCATAGCATTGTCGAGAAAATGATTGATCAAGGA AGCTCCGTGGGCCTTGGAGTCTACGTGCCGATTCTGAAGGCATACTGTAAAGATCACAGGACGGCTGAAGCTACTCAGCTAGTTATGGAGATCAGTAACT CAGGAATACAGTTGGATGCAGATAGCTACGATTCGTTGATCGATGCAGCGATGACTAGCCAAGATTTCCAGTCGGCTTTTCCTCTTTTTAGGGACATGAG GGAGGCAAGAACAATATCTGAACTGAAAGGAAGCTACTTGACAATAATGACAGGTTTGATGGCGAGCCACCGGCCCGAATTGATGGCTGCATTTCTCGAC GAGGTAGTTGAGGATCCTAGAATTGAAGTGAAGACCCACGACTGGATTCGATCATCCATGCCTTTTGTAAAGCCGGGAGGTTAG
AA sequence Show only first row Show all	>Lus10036908 pacid=23171324 polypeptide=Lus10036908 locus=Lus10036908.g ID=Lus10036908.BGIv1.0 annot-version=v1.0 MLSRAALSSFQQRRFSPEAASTLYSFLQPSIFAVKRTPTPAATAADESADNKSLDQRPGDPIRIRHPKVNPHERNRRSMEVIQTPHVKLCCPPQAFASLV YFVEKVSTFINFATIRTVLHSMLRANTAAPAFALIKSLEGCCKELELVRDAECVVETMSVLGVRPDEVSFGFLAYLYALKGDSVKIDELKELRKGFGFVN SSLIGGYVRSGNLEAVSDTILSCYDVNFSRETFCEVINGFMKHGSVNDLAKLIVEAQKLESTSDVVEVERLIGFGVIDACVSLGFSDKAHSIVEKMIDQG SSVGLGVYVPILKAYCKDHRTAEATQLVMEISNSGIQLDADSYDSLIDAAMTSQDFQSAFPLFRDMREARTISELKGSYLTIMTGLMASHRPELMAAFLD EVVEDPRIEVKTHDWIRSSMPFVKPGG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69290			Pentatricopeptide repeat (PPR)...		Lus10036908 [exp]	0	1
AT5G65450		UBP17	ubiquitin-specific protease 17...		Lus10015894 [exp]	6.9	0.9216
					Lus10013097 [exp]	13.0	0.8881
AT2G48160			Tudor/PWWP/MBT domain-containi...		Lus10028004 [exp]	13.3	0.9203
AT3G62300		ATDUF7	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10000430 [exp]	13.7	0.9057
AT5G21160			LA RNA-binding protein (.1.2.3...		Lus10041277 [exp]	15.0	0.8879
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10023504 [exp]	17.0	0.9011
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Lus10043016 [exp]	17.0	0.8852
AT4G12750			Homeodomain-like transcription...		Lus10012302 [exp]	18.3	0.8930
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10002974 [exp]	19.2	0.9165
AT3G22380		TIC	time for coffee (.1.2)		Lus10002448 [exp]	21.0	0.9054

Compare expression of checked genes

Lus10036908 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.