Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13770 582 / 0 RUS3 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) AT3G45890 152 / 3e-40 RUS1 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) AT5G01510 129 / 2e-32 RUS5 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1) AT5G49820 127 / 1e-31 RUS6, EMB1879 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) AT2G31190 123 / 8e-31 WXR1, RUS2 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) AT2G23470 89 / 1e-18 RUS4 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037076 [exp] 753 / 0 AT1G13770 583 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Lus10001047 [exp] 149 / 5e-39 AT3G45890 653 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Lus10001413 [exp] 149 / 6e-39 AT3G45890 658 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Lus10010692 [exp] 134 / 4e-34 AT5G49820 701 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Lus10038136 [exp] 134 / 6e-34 AT5G49820 706 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Lus10003558 [exp] 124 / 6e-31 AT2G31190 649 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Lus10033888 [exp] 110 / 4e-26 AT2G31190 588 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Lus10022474 [exp] 100 / 1e-22 AT2G23470 566 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Lus10016778 [exp] 100 / 2e-22 AT2G23470 570 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G095700 [exp] 652 / 0 AT1G13770 624 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Potri.001G193300 [exp] 145 / 4e-38 AT3G45890 671 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Potri.005G224000 [exp] 120 / 7e-30 AT2G31190 691 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Potri.004G229500 [exp] 112 / 9e-27 AT5G49820 674 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Potri.007G035300 [exp] 102 / 2e-23 AT2G23470 591 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Potri.006G099700 [exp] 95 / 6e-21 AT5G01510 520 / 0.0 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1) Potri.002G038600 [exp] 71 / 1e-13 AT2G31190 333 / 1e-113 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04884 [flax] [poplar] DUF647 Vitamin B6 photo-protection and homoeostasis
Representative CDS sequence Show only first row Show all	>Lus10036909 pacid=23171114 polypeptide=Lus10036909 locus=Lus10036909.g ID=Lus10036909.BGIv1.0 annot-version=v1.0 ATGGCCGGCGGGGAATTATCGGGGAGGACTTTGTCACAGTGGGAGCAGGTGATGGTGATCGAAGAATGGAACGGATCTTCCTCCACAAAGCTCTTCAAGA CAGCCACTCTCACCGCTTCTTCTCCTTCTTCTTCCTCTTCTCCTTCTTTCTCAATCCAAAGGTCTGGAAGCCGCTTCAGTCACGTATGGCGGGGAATTTT ACAAGCATTTGTGCCTGAGGGGTTCCCGAGCAGTGTGACTCCCGATTATGTCCCATTTCAAGTATGGGATTCCTTGCAGGGACTCTCTACTTATATAAGA ACCATGCTTTCAACACAAGCGTTATTGAGTGCGATCGGGGTTGGTGAGAAATCAGCGACTGTTATTGGTGCCACATTCCAGTGGTTTCTGAGAGACTTAA CTGGAATGGTTGGAGGCATACTATTTACGTTTTACCAGGGTTCAAGTCTTGATAGCAATGCCAAAATGTGGCGCTTGGTTGCAGATCTTATGAACGATCT AGGGATGCTGATGGACCTTGTCTCTCCACTGTTCCCTTCAGCCTTTATATTTGTGGTTTGCTTGGGGAGCATCTCCAGATCATTTACTGGTGTTGCTAGT GGTGCAACTAGAGCTGCTTTGACACAGCATTTTGCCCTTCAGAATAATGCAGCCGATATATCTGCAAAGGAAGTTAGTCAAGAGACAGTGGCAACAATGG TTGGAATGGCTCTAGGGATGCTTGTTGCACGAGTAACAACAGGATACCCTTTTGCAATCTGGCTGTGTTTCATGTCACTCACTGTTCTCCATATGTATGC AAACTACAGGGCTGTCCGTTGCCTTGCACTGAACTCTTTGAATATGGAAAGGAGTTCAATCCTTTTACAGCATTTCATGAAAACTGGCCATGTGCTCTCT CCTGAACAGGTTTCTAGGATGGAGCATATTTTACCCTTGTGGACCACTCCTCGAATCTCGGAGGAGTTTAAGTTACTGCATAGCAGGGTTCTGTTAGGCG TCAGGATTTCATCACTCCATCAAAATGAAGTGGTACATCAATTACACTCTTCGGGATCTCATTACAGGAAAGCAAAGTACTTACTGTTGGAAAGGAAGGG AATTATAAACACAATCGTGCATAAAGATGCCAATGCATCTGACATCCTCCAGTCATATATCCATGCCCTCGTTCTGGCGGATTGTGTCGGAGCAACCTCG TCCCTTCATCTAGAGAGCCAATCGTGGATGGATAAACAGTACCAGACTTTCATTCAAAAGCTAAGCTCATCCGGATGGAAAACTGGGCGCCTTCTTTGCC CTTCGATAATTTGGACCGCTAATTGGAAATCCGGTTCTTCAAACGATAAGACTGATTAG
AA sequence Show only first row Show all	>Lus10036909 pacid=23171114 polypeptide=Lus10036909 locus=Lus10036909.g ID=Lus10036909.BGIv1.0 annot-version=v1.0 MAGGELSGRTLSQWEQVMVIEEWNGSSSTKLFKTATLTASSPSSSSSPSFSIQRSGSRFSHVWRGILQAFVPEGFPSSVTPDYVPFQVWDSLQGLSTYIR TMLSTQALLSAIGVGEKSATVIGATFQWFLRDLTGMVGGILFTFYQGSSLDSNAKMWRLVADLMNDLGMLMDLVSPLFPSAFIFVVCLGSISRSFTGVAS GATRAALTQHFALQNNAADISAKEVSQETVATMVGMALGMLVARVTTGYPFAIWLCFMSLTVLHMYANYRAVRCLALNSLNMERSSILLQHFMKTGHVLS PEQVSRMEHILPLWTTPRISEEFKLLHSRVLLGVRISSLHQNEVVHQLHSSGSHYRKAKYLLLERKGIINTIVHKDANASDILQSYIHALVLADCVGATS SLHLESQSWMDKQYQTFIQKLSSSGWKTGRLLCPSIIWTANWKSGSSNDKTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13770		RUS3	ROOT UV-B SENSITIVE 3, Protein...		Lus10036909 [exp]	0	1
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10009182 [exp]	4.5	0.8898
AT3G14400		UBP25	ubiquitin-specific protease 25...		Lus10005591 [exp]	8.5	0.8655
AT5G19150			pfkB-like carbohydrate kinase ...		Lus10041220 [exp]	10.4	0.8635
AT3G54010		DEI1, PAS1	PASTICCINO 1, FKBP-type peptid...		Lus10021502 [exp]	11.3	0.8894
AT4G17190		FPS2	farnesyl diphosphate synthase ...		Lus10022545 [exp]	11.5	0.8697
AT4G23885			unknown protein		Lus10001827 [exp]	12.8	0.8702
AT3G07570			Cytochrome b561/ferric reducta...		Lus10012305 [exp]	15.1	0.8248
AT4G20930			6-phosphogluconate dehydrogena...		Lus10038545 [exp]	15.5	0.8517
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10001782 [exp]	15.8	0.8760
AT2G26300		ATGPA1, GPALPHA...	ARABIDOPSIS THALIANA G PROTEIN...		Lus10004784 [exp]	18.0	0.8571

Compare expression of checked genes

Lus10036909 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.