Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03590 573 / 0 ATUPS1 ureide permease 1 (.1) AT2G03530 568 / 0 ATUPS2, UPS2 ARABIDOPSIS THALIANA UREIDE PERMEASE 2, ureide permease 2 (.1.2) AT2G03520 510 / 0 ATUPS4 ureide permease 4 (.1) AT1G26440 495 / 2e-175 ATUPS5 ureide permease 5 (.1.2.3.4) AT2G03600 407 / 6e-142 ATUPS3 ureide permease 3 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037075 [exp] 732 / 0 AT2G03530 584 / 0.0 ARABIDOPSIS THALIANA UREIDE PERMEASE 2, ureide permease 2 (.1.2) Lus10036911 [exp] 556 / 0 AT2G03530 575 / 0.0 ARABIDOPSIS THALIANA UREIDE PERMEASE 2, ureide permease 2 (.1.2) Lus10037074 [exp] 556 / 0 AT2G03590 575 / 0.0 ureide permease 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G095600 [exp] 615 / 0 AT2G03530 559 / 0.0 ARABIDOPSIS THALIANA UREIDE PERMEASE 2, ureide permease 2 (.1.2) Potri.008G095500 [exp] 608 / 0 AT2G03530 553 / 0.0 ARABIDOPSIS THALIANA UREIDE PERMEASE 2, ureide permease 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF07168 [flax] [poplar] Ureide_permease Ureide permease
Representative CDS sequence Show only first row Show all	>Lus10036910 pacid=23171288 polypeptide=Lus10036910 locus=Lus10036910.g ID=Lus10036910.BGIv1.0 annot-version=v1.0 ATGTATCTAGTGGAGAGCAAAGGAGGAGCCATAGCCTGTATGTTCTTATCCCTCTTCTTCCTTGGGACATGGCCAGCCATCCTCACTCTACTTGAGCGTC GAGGCCGGCTTCCCCAGCACACGTATCTCGATTACTCCATCACCAATCTCCTCGCTGCTGTCGTTATAGCTTTGACATTCGGGCAGATTGGCAGCAGCAC ACCTGCAACTCCTAACTTTTTGACTCAGCTTTCCCAGTTGGGGGATAACTGGCCTTCAGTTCTGTTTGCCATGGCTGGTGGTTTGGTTCTCAGCTTGGGG AATCTCTGCACTCAGTATGCTTGGGCTTTTGTTGGCTTGTCCGTCACTGAAGTCATCACTTCTAGCCTTGTTGTTGTCATAGGAACAACTTTGAACTACT TCTTGGACGACAGAATCAATAGAGCAGAGATTCTTTTCCCTGGAGTTGCTTGTTTCTTCATTGCAGCTTGTCTTGGATCAGTTGTCCATTCATCTAATGC TGCAGATAACAAAGCCAAGCTCCAAAACTTGCCAGTTGATCAAAAAGATGACGAGGAGAATAATGGGGGGCATAGTGGTAGCAATGAAAAGAAGGCAGTA CCTGGAACGGCAGGTTTTCTGATCGAACTCGAAAAGAGAAGATCCATCAAGGTGTTTGGGAAGAGCACAATGATAGGATTGGCCATAACGTTCTTTGCCG GTTTCTGCTTCTCTCTCTTCTCACCCGCCTTCAACTTGGCAACGAACGATCAATGGCACGCCTTGAAGAAAGGAGTTCCTAAGCTGGTTGTCTACACTGC ATTCTTCTGGTTCTCCGTCTCTTGCTTTGTTCTGGCCATCGTTCTGAATGTCACTTTTCTTTACCGCCCAGTTCTGAACCTTCCCAGATCGTCGCCAAAG GCTTATTTCAACGACTGGAACGGCAGAGGCTGGGCATTTTTGGCTGGTCTTCTCTGCGGGTTCGGGAATGGTCTTCAGTTTATGGGTGGCCAAGCTGCTG GATATGCTGCTGCAGATGCTGTTCAGGCACTCCCACTTGTGAGCACATTTTGGGGGATACTGATCTTCAAAGAGTACAGAAGATCTTCGGGAAGAACGTA TGTATTGCTGGTGGCAATGCTTTCTATGTTCATTGCTGCTGTTGGAATCCTCATGGGGTCTTCTGGGCATCGGAAGTGA
AA sequence Show only first row Show all	>Lus10036910 pacid=23171288 polypeptide=Lus10036910 locus=Lus10036910.g ID=Lus10036910.BGIv1.0 annot-version=v1.0 MYLVESKGGAIACMFLSLFFLGTWPAILTLLERRGRLPQHTYLDYSITNLLAAVVIALTFGQIGSSTPATPNFLTQLSQLGDNWPSVLFAMAGGLVLSLG NLCTQYAWAFVGLSVTEVITSSLVVVIGTTLNYFLDDRINRAEILFPGVACFFIAACLGSVVHSSNAADNKAKLQNLPVDQKDDEENNGGHSGSNEKKAV PGTAGFLIELEKRRSIKVFGKSTMIGLAITFFAGFCFSLFSPAFNLATNDQWHALKKGVPKLVVYTAFFWFSVSCFVLAIVLNVTFLYRPVLNLPRSSPK AYFNDWNGRGWAFLAGLLCGFGNGLQFMGGQAAGYAAADAVQALPLVSTFWGILIFKEYRRSSGRTYVLLVAMLSMFIAAVGILMGSSGHRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03590		ATUPS1	ureide permease 1 (.1)		Lus10036910 [exp]	0	1
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10022591 [exp]	10.0	0.9136
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033365 [exp]	19.9	0.9095
AT3G51000			alpha/beta-Hydrolases superfam...		Lus10028340 [exp]	20.3	0.9066
					Lus10012066 [exp]	25.7	0.8763
AT1G11905			B-cell receptor-associated pro...		Lus10020025 [exp]	26.8	0.9058
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10022292 [exp]	31.3	0.8995
AT2G19130			S-locus lectin protein kinase ...		Lus10042266 [exp]	31.7	0.9000
AT5G09960			unknown protein		Lus10006803 [exp]	33.9	0.8875
AT1G19130			unknown protein		Lus10027661 [exp]	35.1	0.8974
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10009376 [exp]	35.5	0.9021

Compare expression of checked genes

Lus10036910 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.