Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03530 518 / 0 ATUPS2, UPS2 ARABIDOPSIS THALIANA UREIDE PERMEASE 2, ureide permease 2 (.1.2) AT2G03590 514 / 2e-179 ATUPS1 ureide permease 1 (.1) AT1G26440 482 / 1e-166 ATUPS5 ureide permease 5 (.1.2.3.4) AT2G03520 474 / 2e-163 ATUPS4 ureide permease 4 (.1) AT2G03600 388 / 7e-131 ATUPS3 ureide permease 3 (.1.2.3.4.5) AT2G27530 308 / 1e-101 PGY1 PIGGYBACK1, Ribosomal protein L1p/L10e family (.1.2) AT1G08360 305 / 2e-100 Ribosomal protein L1p/L10e family (.1) AT5G22440 302 / 2e-99 Ribosomal protein L1p/L10e family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037074 [exp] 672 / 0 AT2G03590 575 / 0.0 ureide permease 1 (.1) Lus10036910 [exp] 536 / 0 AT2G03590 589 / 0.0 ureide permease 1 (.1) Lus10037075 [exp] 535 / 0 AT2G03530 584 / 0.0 ARABIDOPSIS THALIANA UREIDE PERMEASE 2, ureide permease 2 (.1.2) Lus10026664 [exp] 355 / 1e-114 AT2G03510 537 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10004648 [exp] 352 / 2e-113 AT2G03510 541 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10020615 [exp] 313 / 1e-101 AT2G27530 313 / 1e-107 PIGGYBACK1, Ribosomal protein L1p/L10e family (.1.2) Lus10004871 [exp] 0 / 1 AT2G27530 201 / 3e-92 PIGGYBACK1, Ribosomal protein L1p/L10e family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G095600 [exp] 564 / 0 AT2G03530 559 / 0.0 ARABIDOPSIS THALIANA UREIDE PERMEASE 2, ureide permease 2 (.1.2) Potri.008G095500 [exp] 563 / 0 AT2G03530 553 / 0.0 ARABIDOPSIS THALIANA UREIDE PERMEASE 2, ureide permease 2 (.1.2) Potri.004G202832 [exp] 316 / 1e-104 AT2G27530 337 / 7e-119 PIGGYBACK1, Ribosomal protein L1p/L10e family (.1.2) Potri.007G034800 [exp] 315 / 3e-104 AT2G27530 338 / 2e-119 PIGGYBACK1, Ribosomal protein L1p/L10e family (.1.2) Potri.007G035600 [exp] 313 / 2e-103 AT2G27530 339 / 9e-120 PIGGYBACK1, Ribosomal protein L1p/L10e family (.1.2) Potri.004G202766 [exp] 305 / 2e-100 AT1G08360 336 / 1e-118 Ribosomal protein L1p/L10e family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00687 [flax] [poplar] Ribosomal_L1 Ribosomal protein L1p/L10e family CL0184 [flax] [poplar] DMT PF07168 [flax] [poplar] Ureide_permease Ureide permease
Representative CDS sequence Show only first row Show all	>Lus10036911 pacid=23171223 polypeptide=Lus10036911 locus=Lus10036911.g ID=Lus10036911.BGIv1.0 annot-version=v1.0 ATGAGTAAGCTTCAGAGCGATTCGTTGAGAGATGCGATCACAACCATCAAGACTGCTGCACAAGAGAAGCCGCGCAAGTTCACGGAGACCGTTGAGCTCC AGATTGGGTTGAAGAACTATGACCCACAGAAGGACAAGCGTTTCAGCGGCTCCGTCAAGCTGCCCCACATTCCCAGGCCAAAGATGAAAGTCTGCATGCT TGGAGATGCCCAGCACGTTGAGGAGTTGCTGCTTATGATTACTGGGTCTGTGGTTTTGAATGTGAAGAAGCTTGCCAAGCAGTACCATGCTTTTTTGGCT TCAGAGTCTGTCATTAAGCAGATTCCCAGACTTCTCGGCCCTGGAAAGTTCCCCACACTTGTGAGTCACCAGGAGTCACTCGAGTCCAAGGTGAACGAGA TCAAGGCTACAGTGAAGTTTCAGCTGAAGAAGGTTCTGTGCATGGGTGTTGCTGTTGGAAACCTGGACATGGACGAGAAGCAGATCTTCCAGAACGTTCA GATGAGCATCAATTTCCTCGTCTCCCTTCTGAAGAAGAACTGGCAGAACGTCAAGGTTTTGAATCTGAAGAGTACCATGGGGAAACCAGTTGGAGCTTTC ATAGCTGTATCATTTGAAGTTATTCTTATCTGGGTGACTGCAGGTATCGTACTGCTAATTCAGCGGCGGACTCTGGCGGCGGGTGGCTTACCGTGGTGGG AGGCTTTCTTTCCTTTCCTTGATCCGGATTTTGAAGGAGGAACAACCTTATTTCCGAAAATGTATGTAGTAGAAAGCAAAGGAGGGGCCATCTTATGCAT GCTGCTGGCTCTGCTCTTCTTAGGGACATGGCCTGCAATCATGGCTCTACTCGAACGACGAGGCCGACTCCCTCAGCACACTTACCTTGATTACTCCATC ACCAATCTACTAGCAGCTATCATCATTGCCTTCACATTTGGCGAGATCGGGAACAACTCCCCGAATTTTATCCCCCAGCTCTCCCAGCTCAGTGAGAACT GGCCTTCTGTTATGTTTACAATGGTGGGTGGAGTTGTGCTTAGCCTGGGGAATCTGTCGACTCAATACGCTTGGGCGTTTGTCGGTTTGTCGGTCACTGA AGTGATCACTGCTAGCATCACTGTTGTTATAGGTACTACTGTGAATTACTTCTTGGATGATAGGATAAACAAGGCCGAGATTCTTTTCAGCGGAGTCGGA TGCTTTCTCGTTGCGGTATTCCTTGGTTCGTTAGTCCATTTGTCCAATGCTGCTGATAATCGAGCTAAGCTCGAAAGCCTCTCGATCAAGAACGACATGG AGAATGGAGATGTCCGAGCTAAGAAGGCAGCATTTGGTACAGCGGATTTCCTTGTCCAGCTCGAGAACCGAAGAGCAATCAAGGTCTTGGGAAAGGGGAC TATAATAGGACTGGCAATAACATTCTTCGCCGGAGTTTGCTTCTCGCTCTTCTCACCAGCTTTCAACTTAGCCACGAACGATCAATGGCACGCCTTGAAA GAAGGAGTTCCTAAATTAGTAGTCTACACCGCATTCTTCTGGTTCTCAGTGTGCTGCTTCGTGATCGCCATCATTCTGAACGTCACTTTCCTATACCGCC CGGTGCTTAACCTTCCGAAATCGTCCCTCAAGGCTTATCTACACGACTGGAATGGGCGCGGATGGGCACTCCTAGCGGGCCTAATTTGCGGGTTTGGAAA CGGGCTCCAGTTCATGGGCGGCCAAGCTGCTGGGTATGCAGCAGCTGATGCTGTACAGGCACTTCCTTTGGTGAGCACATTCTGGGGGATGCTTCTGTTC GGAGAGTACCGGAAATCGTCTCGAACAACGTACTTGCTGCTCGTCGGAATGCTGTTCATGTTCGTCGTTGCTGTTGCTCTTCTCATGGCTTCTTCCGGCC ATCGAAAGTAG
AA sequence Show only first row Show all	>Lus10036911 pacid=23171223 polypeptide=Lus10036911 locus=Lus10036911.g ID=Lus10036911.BGIv1.0 annot-version=v1.0 MSKLQSDSLRDAITTIKTAAQEKPRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEELLLMITGSVVLNVKKLAKQYHAFLA SESVIKQIPRLLGPGKFPTLVSHQESLESKVNEIKATVKFQLKKVLCMGVAVGNLDMDEKQIFQNVQMSINFLVSLLKKNWQNVKVLNLKSTMGKPVGAF IAVSFEVILIWVTAGIVLLIQRRTLAAGGLPWWEAFFPFLDPDFEGGTTLFPKMYVVESKGGAILCMLLALLFLGTWPAIMALLERRGRLPQHTYLDYSI TNLLAAIIIAFTFGEIGNNSPNFIPQLSQLSENWPSVMFTMVGGVVLSLGNLSTQYAWAFVGLSVTEVITASITVVIGTTVNYFLDDRINKAEILFSGVG CFLVAVFLGSLVHLSNAADNRAKLESLSIKNDMENGDVRAKKAAFGTADFLVQLENRRAIKVLGKGTIIGLAITFFAGVCFSLFSPAFNLATNDQWHALK EGVPKLVVYTAFFWFSVCCFVIAIILNVTFLYRPVLNLPKSSLKAYLHDWNGRGWALLAGLICGFGNGLQFMGGQAAGYAAADAVQALPLVSTFWGMLLF GEYRKSSRTTYLLLVGMLFMFVVAVALLMASSGHRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03530		ATUPS2, UPS2	ARABIDOPSIS THALIANA UREIDE PE...		Lus10036911 [exp]	0	1
AT4G15000			Ribosomal L27e protein family ...		Lus10039017 [exp]	1.0	0.9481
AT3G16080			Zinc-binding ribosomal protein...		Lus10011446 [exp]	1.4	0.9371
AT1G26740			Ribosomal L32p protein family ...		Lus10008442 [exp]	1.7	0.9245
AT1G09590			Translation protein SH3-like f...		Lus10021079 [exp]	2.8	0.9016
AT4G15000			Ribosomal L27e protein family ...		Lus10027314 [exp]	3.9	0.9003
AT5G57120			unknown protein		Lus10001627 [exp]	4.0	0.8925
AT2G21580			Ribosomal protein S25 family p...		Lus10034277 [exp]	4.7	0.8761
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10005348 [exp]	6.0	0.8893
AT2G20490		NOP10, EDA27	EMBRYO SAC DEVELOPMENT ARREST ...		Lus10024913 [exp]	6.5	0.8417
AT1G48830			Ribosomal protein S7e family p...		Lus10017497 [exp]	7.5	0.8940

Compare expression of checked genes

Lus10036911 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.