Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03510 495 / 4e-177 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026664 [exp] 566 / 0 AT2G03510 537 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10004648 [exp] 565 / 0 AT2G03510 541 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10037073 [exp] 390 / 9e-137 AT2G03510 354 / 1e-122 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10037074 [exp] 127 / 3e-32 AT2G03590 575 / 0.0 ureide permease 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G158700 [exp] 537 / 0 AT2G03510 557 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0433 [flax] [poplar] SPFH PF01145 [flax] [poplar] Band_7 SPFH domain / Band 7 family
Representative CDS sequence Show only first row Show all	>Lus10036912 pacid=23170998 polypeptide=Lus10036912 locus=Lus10036912.g ID=Lus10036912.BGIv1.0 annot-version=v1.0 ATGGATTCACAGCGAGGAGGAGGAGCTCCACAACATCGGGAGCAACCACCTGCGCCACCGGCTCCCGGCGCCGGAAACCCCGTTCCTGCCGTATTAATCT TTCTCTTCATCGTCGCCATGGTAATGGTCCCATCAACATCAAGTTTAAAGAGTACCTTCTCAATAGTGCATCAAGTGCCAGAAGGCCACGTTGGGGTGTA TTGGAGAGGCGGTGCTCTTTTGGACACAATTACAGAACCAGGTTTTCATTTCAAGTTGCCTTTGATAACTCAGTATGAACCAGTTCAAGTGACCCTCCAG ACAGACCTAGTGAGGGACATTCCTTGTGGTACAAAAGGAGGTGTCATGATAAACTTTGAAAAGATCGAGGTAGTTAATAGGCTTCGTAAGGACTATGTAT ACGACATCCTAATGAACTACGGAGTGCAGTACGACAATACTTGGATTTATGACAAGATTCATCACGAAATCAATCAATTCTGCAGCTCACATTCTCTCCA GCAGGTCTACATTGATATGTTTGATCAGATTGATGAAAAGATGAAAGATGCACTCCAGGGTGATTGCACCAGGTATGCTCCTGGAATCGAAATCCTCAGC GTCCGTGTAACAAAGCCTGTTCTAATCGCCATCGAGAAACAAAAAGTAGTGGAGAAAGAGGCAGAGACAGCAAAGAGAATGGCCATTAGTGAAGCTGAGA AGAGTGCCAGTGTAAGCAAGATCCGAATGGAGCAGAAGTTGATGGAGAAAGACAGTGAAAGGAGACAGCAAGAGATCGCAAACCACATGTACATGGCTCA TGAAAAGAGCTTAGCGGATGCTGCATTCTACCGGGTGATGAAGGAAGCTGAAGCAAACAAGCTGAAGTTGACGCCCCAGTTCCTCGAGTTGAAATTCATC GAAGCGATAGCGAACAACACGAAGGTGTTCTTTGGGGAGAAGGTACCGAATATGGTTCTTGATCAGAGGCTGCTGGGGAACTTCCTGCATGGGACAATTT CCGGAGACGGAGGGCCTAACTTGGACAAGGTTGCAAAATTCGATGCTTAG
AA sequence Show only first row Show all	>Lus10036912 pacid=23170998 polypeptide=Lus10036912 locus=Lus10036912.g ID=Lus10036912.BGIv1.0 annot-version=v1.0 MDSQRGGGAPQHREQPPAPPAPGAGNPVPAVLIFLFIVAMVMVPSTSSLKSTFSIVHQVPEGHVGVYWRGGALLDTITEPGFHFKLPLITQYEPVQVTLQ TDLVRDIPCGTKGGVMINFEKIEVVNRLRKDYVYDILMNYGVQYDNTWIYDKIHHEINQFCSSHSLQQVYIDMFDQIDEKMKDALQGDCTRYAPGIEILS VRVTKPVLIAIEKQKVVEKEAETAKRMAISEAEKSASVSKIRMEQKLMEKDSERRQQEIANHMYMAHEKSLADAAFYRVMKEAEANKLKLTPQFLELKFI EAIANNTKVFFGEKVPNMVLDQRLLGNFLHGTISGDGGPNLDKVAKFDA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03510			SPFH/Band 7/PHB domain-contain...		Lus10036912 [exp]	0	1
AT1G61770			Chaperone DnaJ-domain superfam...		Lus10020062 [exp]	8.6	0.7408
AT5G40270			HD domain-containing metal-dep...		Lus10013004 [exp]	11.3	0.7103
					Lus10010548 [exp]	17.1	0.7056
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10019611 [exp]	17.9	0.6715
AT1G72200			RING/U-box superfamily protein...		Lus10028454 [exp]	21.6	0.6654
AT3G52170			DNA binding (.1.2)		Lus10028828 [exp]	22.4	0.6796
AT3G62600		ATERDJ3B	DNAJ heat shock family protein...		Lus10022297 [exp]	26.3	0.6083
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10020603 [exp]	29.4	0.6724
AT1G28250			unknown protein		Lus10015429 [exp]	30.9	0.6826
AT1G23790			Plant protein of unknown funct...		Lus10030870 [exp]	36.2	0.5893

Compare expression of checked genes

Lus10036912 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.