Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13820 461 / 4e-164 alpha/beta-Hydrolases superfamily protein (.1) AT5G39220 400 / 2e-140 alpha/beta-Hydrolases superfamily protein (.1) AT5G09430 76 / 3e-15 alpha/beta-Hydrolases superfamily protein (.1) AT4G36530 72 / 4e-14 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G19850 64 / 3e-11 alpha/beta-Hydrolases superfamily protein (.1) AT1G78210 63 / 6e-11 alpha/beta-Hydrolases superfamily protein (.1) AT4G39955 62 / 1e-10 alpha/beta-Hydrolases superfamily protein (.1) AT1G72620 59 / 2e-09 alpha/beta-Hydrolases superfamily protein (.1) AT1G80280 56 / 2e-08 alpha/beta-Hydrolases superfamily protein (.1) AT1G52750 55 / 5e-08 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037072 [exp] 494 / 2e-178 AT1G13820 367 / 2e-128 alpha/beta-Hydrolases superfamily protein (.1) Lus10032977 [exp] 370 / 3e-125 AT5G39220 366 / 2e-123 alpha/beta-Hydrolases superfamily protein (.1) Lus10028315 [exp] 73 / 5e-14 AT4G36530 538 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10019631 [exp] 68 / 1e-12 AT1G72620 270 / 3e-89 alpha/beta-Hydrolases superfamily protein (.1) Lus10023147 [exp] 63 / 5e-11 AT4G39955 414 / 3e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10020926 [exp] 62 / 9e-11 AT1G78210 358 / 3e-124 alpha/beta-Hydrolases superfamily protein (.1) Lus10000630 [exp] 61 / 3e-10 AT4G39955 386 / 2e-135 alpha/beta-Hydrolases superfamily protein (.1) Lus10031137 [exp] 61 / 7e-10 AT4G25290 778 / 0.0 DNA photolyases;DNA photolyases (.1) Lus10041763 [exp] 57 / 1e-08 AT4G36530 484 / 6e-172 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G158800 [exp] 494 / 3e-177 AT1G13820 489 / 4e-175 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G120000 [exp] 433 / 7e-153 AT5G39220 433 / 9e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G093500 [exp] 417 / 2e-146 AT5G39220 435 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G313100 [exp] 78 / 5e-16 AT5G09430 466 / 7e-167 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G121000 [exp] 73 / 4e-14 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G097400 [exp] 65 / 9e-12 AT1G78210 407 / 1e-143 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G174900 [exp] 62 / 3e-10 AT1G80280 828 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G129500 [exp] 58 / 5e-09 AT4G25290 809 / 0.0 DNA photolyases;DNA photolyases (.1) Potri.003G059400 [exp] 56 / 3e-08 AT1G15490 845 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.019G063900 [exp] 55 / 4e-08 AT5G38520 447 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10036913 pacid=23171277 polypeptide=Lus10036913 locus=Lus10036913.g ID=Lus10036913.BGIv1.0 annot-version=v1.0 ATGCTGCTAACTACCACCGTTGCAGGCACTGTCGCAACTCCACTCGTCGCCAAAGTCCACAACTCCCGCCGATTCACCATCTCAGCGGAGAAATTTCCTT CTTTCCTGCCGAAACAAATCGAGAACATCAAAGACAAATCCGCCCGGAACCTTGCTTCCCGAATTGAGCGGCTTCCCGTCGCCGTTGGGGATACGGGGGA TTGTGTGATGAGCAGTTGTGTGAAGCCATTGTCGATTCAGAGCAATACAACTCCGTTGATTCTCCTCCATGGATTTGACAGTTCATGCTTAGAATGGAGA TACACATTCCCACAGCTTGAAGCAGCTGGATTAGACACTTGGGCTGTTGATGTCCTTGGTTGGGGTTTCTCAGATTTAGGGAAGCTTCCACCATGTAATG TGCAAACAAAGCGGGAGCATCTCTATCAGCTTTGGAAGAGCCACATTAGAAGGCCCGTCATATTGGTTGGACCAAGCCTTGGTGCAGCCGTTGCAATTGA TTTTGCTGCTCGGTATCCTGAAGCTGTGGAGAAGTTGGTTCTGATTGATGCAAGTGTGTATGCTGAAGGGACCGGCGACCTAGCAAAGCTACCAAAGATG ATAGCATATGCTGGAGTTTCGCTGCTGAAGAGTGTACCGCTGCGACTGTTTGTCAACATCCTCGCATTTAACGATTTACCATTCGAAACAAGTGTTGATT GGATGAACATTGGACGTTTACATTGTATGTACCGCTGGTGGGAGGATGCAACTGTTGATTTCATGGTTAGTGGTGGCTATAACGTTGCTGGTCTCATACC TAAGGTGAATCAGAAGACGCTGATCATCTGGGGCGAAGATGACAAGATCATTAGCAGCACATTAGGAGTGAGGCTACATTGTGAGCTGCCAAATGCAGTC ATACGCCAGATACCAAACTGCGGCCACATACCTCATGTCGAGAAGCCCGAATCGGTCGCCAAACTTATCGAGGAGTTCGTCCAGGAAGATTGTTTCAAAG TGGCTCAACTTGCTTGA
AA sequence Show only first row Show all	>Lus10036913 pacid=23171277 polypeptide=Lus10036913 locus=Lus10036913.g ID=Lus10036913.BGIv1.0 annot-version=v1.0 MLLTTTVAGTVATPLVAKVHNSRRFTISAEKFPSFLPKQIENIKDKSARNLASRIERLPVAVGDTGDCVMSSCVKPLSIQSNTTPLILLHGFDSSCLEWR YTFPQLEAAGLDTWAVDVLGWGFSDLGKLPPCNVQTKREHLYQLWKSHIRRPVILVGPSLGAAVAIDFAARYPEAVEKLVLIDASVYAEGTGDLAKLPKM IAYAGVSLLKSVPLRLFVNILAFNDLPFETSVDWMNIGRLHCMYRWWEDATVDFMVSGGYNVAGLIPKVNQKTLIIWGEDDKIISSTLGVRLHCELPNAV IRQIPNCGHIPHVEKPESVAKLIEEFVQEDCFKVAQLA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13820			alpha/beta-Hydrolases superfam...		Lus10036913 [exp]	0	1
AT3G25480			Rhodanese/Cell cycle control p...		Lus10001215 [exp]	1.7	0.9301
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Lus10017673 [exp]	6.0	0.9055
AT5G59250			Major facilitator superfamily ...		Lus10016505 [exp]	7.1	0.8970
AT4G15110		CYP97B3	"cytochrome P450, family 97, s...		Lus10039040 [exp]	8.1	0.9168
AT4G22890		PGR5-LIKEA, PGR...	PGR5-LIKE A (.1.2.3.4.5)		Lus10014135 [exp]	10.7	0.9186
AT2G43560			FKBP-like peptidyl-prolyl cis-...		Lus10027115 [exp]	12.5	0.9148
AT4G27700			Rhodanese/Cell cycle control p...		Lus10008866 [exp]	13.2	0.9101
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Lus10035346 [exp]	18.5	0.9087
AT5G66190		ATLFNR1	ferredoxin-NADP\(+\)-oxidoredu...		Lus10028451 [exp]	20.8	0.9100
AT4G01150			unknown protein		Lus10003031 [exp]	23.5	0.9054

Compare expression of checked genes

Lus10036913 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.