Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18650 130 / 3e-38 PDCB3 plasmodesmata callose-binding protein 3 (.1) AT2G03505 124 / 9e-36 Carbohydrate-binding X8 domain superfamily protein (.1) AT1G69295 116 / 4e-32 PDCB4 plasmodesmata callose-binding protein 4 (.1) AT1G13830 111 / 1e-30 Carbohydrate-binding X8 domain superfamily protein (.1) AT5G61130 111 / 2e-30 PDCB1 plasmodesmata callose-binding protein 1 (.1) AT5G08000 105 / 5e-28 PDCB2, E13L3 PLASMODESMATA CALLOSE-BINDING PROTEIN 2, "glucan endo-1,3-beta-glucosidase-like protein 3", glucan endo-1,3-beta-glucosidase-like protein 3 (.1) AT4G13600 99 / 3e-25 Carbohydrate-binding X8 domain superfamily protein (.1) AT1G26450 93 / 2e-23 Carbohydrate-binding X8 domain superfamily protein (.1) AT1G11820 90 / 8e-21 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G01630 88 / 3e-20 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037071 [exp] 234 / 2e-78 AT1G18650 138 / 3e-41 plasmodesmata callose-binding protein 3 (.1) Lus10004650 [exp] 182 / 1e-57 AT1G18650 141 / 4e-42 plasmodesmata callose-binding protein 3 (.1) Lus10026662 [exp] 180 / 1e-56 AT1G18650 145 / 2e-43 plasmodesmata callose-binding protein 3 (.1) Lus10034690 [exp] 126 / 2e-35 AT1G18650 157 / 8e-48 plasmodesmata callose-binding protein 3 (.1) Lus10021157 [exp] 117 / 8e-33 AT1G18650 157 / 7e-49 plasmodesmata callose-binding protein 3 (.1) Lus10040522 [exp] 117 / 3e-32 AT1G18650 158 / 7e-49 plasmodesmata callose-binding protein 3 (.1) Lus10021619 [exp] 115 / 2e-31 AT1G18650 151 / 1e-45 plasmodesmata callose-binding protein 3 (.1) Lus10032601 [exp] 105 / 2e-28 AT4G13600 167 / 2e-52 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10040461 [exp] 90 / 7e-21 AT2G16230 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G158900 [exp] 149 / 8e-45 AT1G18650 129 / 1e-37 plasmodesmata callose-binding protein 3 (.1) Potri.008G095300 [exp] 145 / 1e-43 AT1G18650 140 / 2e-42 plasmodesmata callose-binding protein 3 (.1) Potri.012G065750 [exp] 125 / 1e-35 AT1G18650 142 / 1e-42 plasmodesmata callose-binding protein 3 (.1) Potri.015G057800 [exp] 114 / 1e-31 AT1G18650 151 / 3e-46 plasmodesmata callose-binding protein 3 (.1) Potri.017G055700 [exp] 110 / 5e-30 AT4G13600 152 / 3e-46 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.001G315700 [exp] 103 / 3e-27 AT4G13600 155 / 2e-47 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.011G006100 [exp] 93 / 8e-22 AT1G11820 805 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.004G010500 [exp] 91 / 4e-21 AT1G11820 794 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.008G082900 [exp] 88 / 2e-20 AT1G79480 159 / 3e-45 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.004G153800 [exp] 88 / 5e-20 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10036914 pacid=23171232 polypeptide=Lus10036914 locus=Lus10036914.g ID=Lus10036914.BGIv1.0 annot-version=v1.0 ATGGCTGTTGCTCTAGCCTTTCTAGTCTTGTTCCTGGCCCTCACTGGCCATACAACTGCTAATTACTGCCTGTGCAAAGATGGGGTTGCTGAGCAAGCTT TGCAGAAGGCCATTGATTACGCCTGTGGCGCTGGAGCTGACTGTACACCAATCCTCCAGAATGGAGCTTGCTTCCAGCCCAACACCGTCAAAGACCACTG CAACTATGCTGTCAATAGCTACTTCCAGAGGAAAGGCCAAGCCGCTGGCACCTGTGATTTCAGCGGTTCTGCGACTCCTAGTGTGTCTCCCCCCACCGGT GTAACTTCCACATGTGTTTTCCCTGCAAGTCCTGGCAATGCAGGAACCTCACCTGGAACAGGAACTGGCATGGTTCCTGGTACCGGCACAGGAACCGGCA CTGTGCCTGGCGCCGGCGCCGGCACCGGAACCGGAACCGGCGGCACTGGCACTGGAACAGGAACAGGGACAGGGACAGGGACAGGAACAGGGATGGTTCC AGGATCAACAACTGGAACTCCATCAGTGTTTGGAACAGGTTCAGGGTTAGGTCCAACAGGGTCAGGGTTAGGTGATGGCAGTGGAGTTTCCCAAAAAATT GCAAACTTGATCATCATCTTTGCTTCCTCTTGTTTGGCCCTCTTGGTTTCCGGGCTATAG
AA sequence Show only first row Show all	>Lus10036914 pacid=23171232 polypeptide=Lus10036914 locus=Lus10036914.g ID=Lus10036914.BGIv1.0 annot-version=v1.0 MAVALAFLVLFLALTGHTTANYCLCKDGVAEQALQKAIDYACGAGADCTPILQNGACFQPNTVKDHCNYAVNSYFQRKGQAAGTCDFSGSATPSVSPPTG VTSTCVFPASPGNAGTSPGTGTGMVPGTGTGTGTVPGAGAGTGTGTGGTGTGTGTGTGTGTGTGMVPGSTTGTPSVFGTGSGLGPTGSGLGDGSGVSQKI ANLIIIFASSCLALLVSGL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10036914 [exp]	0	1
AT1G54990		RGR1, AXR4	REDUCED ROOT GRAVITROPISM 1, R...		Lus10004478 [exp]	3.2	0.8479
AT4G32330			TPX2 (targeting protein for Xk...		Lus10002915 [exp]	4.0	0.8558
AT2G33510		AtCFL1	unknown protein		Lus10002577 [exp]	4.2	0.8542
AT4G13710			Pectin lyase-like superfamily ...		Lus10042509 [exp]	5.2	0.8071
AT2G19690		PLA2-BETA	phospholipase A2-beta (.1.2)		Lus10028189 [exp]	8.5	0.8174
AT2G33510		AtCFL1	unknown protein		Lus10001804 [exp]	9.3	0.8678
AT4G15790			unknown protein		Lus10008380 [exp]	9.5	0.8248
AT1G28120			unknown protein		Lus10030429 [exp]	11.5	0.8330
AT5G25510			Protein phosphatase 2A regulat...		Lus10008104 [exp]	13.2	0.8410
AT5G14230			unknown protein		Lus10022339 [exp]	13.9	0.7995

Compare expression of checked genes

Lus10036914 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.