Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69220 827 / 0 SIK1 Protein kinase superfamily protein (.1.2) AT1G53165 259 / 3e-75 ATMAP4KALPHA1 ,ATMAP4K ALPHA1 Protein kinase superfamily protein (.1.2.3) AT3G15220 258 / 5e-75 Protein kinase superfamily protein (.1) AT4G24100 199 / 8e-54 Protein kinase superfamily protein (.1) AT4G10730 198 / 2e-53 Protein kinase superfamily protein (.1) AT1G79640 196 / 4e-53 Protein kinase superfamily protein (.1.2) AT5G14720 192 / 1e-51 Protein kinase superfamily protein (.1) AT1G70430 185 / 1e-49 Protein kinase superfamily protein (.1) AT3G13530 189 / 3e-49 MAPKKK7, MAP3KE1 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) AT3G07980 181 / 1e-46 MAPKKK6, MAP3KE2 MAP3K EPSILON PROTEIN KINASE 2, mitogen-activated protein kinase kinase kinase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037070 [exp] 1328 / 0 AT1G69220 909 / 0.0 Protein kinase superfamily protein (.1.2) Lus10042862 [exp] 228 / 6e-64 AT3G15220 827 / 0.0 Protein kinase superfamily protein (.1) Lus10028163 [exp] 216 / 3e-59 AT1G53165 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10014542 [exp] 203 / 8e-55 AT5G14720 895 / 0.0 Protein kinase superfamily protein (.1) Lus10000878 [exp] 198 / 3e-53 AT4G24100 887 / 0.0 Protein kinase superfamily protein (.1) Lus10001677 [exp] 199 / 5e-53 AT4G10730 892 / 0.0 Protein kinase superfamily protein (.1) Lus10033230 [exp] 197 / 7e-53 AT4G24100 895 / 0.0 Protein kinase superfamily protein (.1) Lus10017326 [exp] 197 / 2e-52 AT4G10730 883 / 0.0 Protein kinase superfamily protein (.1) Lus10026108 [exp] 191 / 5e-51 AT1G79640 789 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G157400 [exp] 864 / 0 AT1G69220 855 / 0.0 Protein kinase superfamily protein (.1.2) Potri.011G116300 [exp] 266 / 1e-77 AT3G15220 817 / 0.0 Protein kinase superfamily protein (.1) Potri.001G397600 [exp] 254 / 1e-73 AT3G15220 828 / 0.0 Protein kinase superfamily protein (.1) Potri.001G349300 [exp] 200 / 2e-54 AT5G14720 963 / 0.0 Protein kinase superfamily protein (.1) Potri.003G186700 [exp] 198 / 2e-53 AT1G79640 862 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G084700 [exp] 197 / 6e-53 AT4G10730 905 / 0.0 Protein kinase superfamily protein (.1) Potri.001G037900 [exp] 196 / 6e-53 AT1G79640 858 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G146000 [exp] 194 / 6e-52 AT4G10730 902 / 0.0 Protein kinase superfamily protein (.1) Potri.007G070100 [exp] 188 / 7e-49 AT3G13530 1960 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) Potri.005G094200 [exp] 183 / 2e-47 AT3G13530 1979 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10036915 pacid=23171168 polypeptide=Lus10036915 locus=Lus10036915.g ID=Lus10036915.BGIv1.0 annot-version=v1.0 ATGGATCACCCGCCTACTTACCGCCGATCATGGAAACCGCCGGCGCCGACCACCGACATCTACTCCACATTCGTCGTCCACGACTCCTCGTCTGAATCCG AGCCGGATCCGAAACCCAGACCCGCCAGGAGCTCCTCCTCCCGTCTCCCTAACACCACCACCGACGACATCTACGCCACCACGGTGTACAAGGGCGGCGA TCTCGCGAAGAGCGACGGAGAGGAGGATGAAGAAGACGAGGAATCGCTGCCACCGCTCCTCAAGCGCCTCCCGAAAGACTTCGGGGGCGGGATGGACGAC GACCTGGCGGAGGACGCTGGCGACGACTACGATGGCGACTTCGGGACGATGATCGTGAAAACGAATCGAGGCGGAGGAGGAGGAGGTAGGCAACGGAACC TTTCGTCGTCTTCCACGACAGCTAAGTCTCCGTGGAGCAGCTCGTCGTATGGGAATTTCAGTAAGAGGGACTACGGCGGCGATGAGGAAGATGAGGACGA AGACGATAGCGGCGATGGGGAAGGGTTTGGGACGTTTGTGGTGAAATCGACGTTGAGTGGGACGGTAGTGAGGAAGAGTGGTGGAGATGGTGGTAGTGGA TCGACTATGGGGAGAGCTGTGGCGAGCATGCAGGGAGCTATGAATTTAGGGTTTGGGAATCAGAGGAGGAGGAGGAGCGGATCGTTGTCTTCACAGGGGG ACGACAGCAGGCACCATCCACATACTAAAGTCTCTGCTAGCTCGATTCCGGATAGTGTTACCAGAGAGGATCCTACTACCAAGTATGAATTGCTCAATGA ACTAGGGAAGGGGTCGTATGGGGCTGTCTACAAAGCAAGGGATTTAAGGACTTCAGAGCTTGTGGCGATCAAAGTTATATCGTTATCAGAGGGAGAAGAG GGTTATGAAGAAATTCGAGGCGAGATTGAGATGTTGCAGCAATGTAGCCATCCGAATGTTGTGCGGTACCTAGGAAGTTATCAAGGTGAAGACTATCTTT GGATAATTATGGAGTATTGTGGGGGTGGAAGTGTGGCTGACTTGATGAATGTTACCGAGGAAGCTTTGGAGGAGAATCAAATAGCATATATATGCCGGGA AGCTCTTAAGGGCCTTGCTTATTTGCATTCAATTTTCAAAGTACATAGGGATATCAAAGGTGGCAACATTTTACTAACCGAACAAGGAGAAGTAAAGTTG GGTGATTTTGGGGTTGCTGCACAACTTACCAGAACCATGTCAAAGCGGAACACGTTCATCGGCACTCCACATTGGATGGCCCCAGAAGTAATTCAGGAAA GCCGCTATGATGGGAAGGTGGATGTGTGGGCCCTTGGCGTTTCTGCAATTGAGATGGCTGAGGGTCTTCCTCCAAGATCATCGGTTCATCCTATGAGGGT TTTGTTCATGATATCAATTGAACCAGCGCCAATGCTTGAGGATAAAGAGAAGTGGTCGCTTATCTTTCACGATTTCGTTGCAAAGTGCCTCACAAAGGAA CCACGTTCACGTCCACCCGCATTTGAAATGTTGAAGCACAAATTCATTGAGAGATGCAAAGTTGGAGCCTCTGCAATGTTGCCTAAGATTGAAAAGGCTA GAAAAGTTAGGGCGGCAATTGCTATGCAACCACAAAATCTTGATCCGGGTGTCCCAGAGCCACCAGAACAGTCAAACTCCAATGAGGAATATGAGGCCAC AGTTCCATCAAGGAGACCTCAGGAAGCAAGTGAATTGCCTAGTTCATCAGTTGGTGGGCAATGCCCTGTTGGAGGTGATTTTGGCACTTTTATCGTCCAT GTCGGAGATGAGGGGAATAAGACCATGAAGCATGATCAATTCAGGCCTATCAATGAAACGTCTGATATCGCGGAGGGTGCTACTACAGTTATCGGAGTCC AACCATCTGAATCTTGGAAGGATAGTAGTACCAATGGTGATGCTGCCAAAAAGATTCTGTTGGGTGATGCATCCCAGACTTTGGAGGCATTTTCATCTCC TTTCGGAACATCCACCGTCACTCCCAAGATAAAAAACTTGTCTCAAACTGTTAGAGGCGAAGGAGGAAAGAGCGCCACAACTTCAAAAGGCGAAAATGCC AGTAAGCGAGTTTTCGCATTGCAAGATAAGCTATGGTCGATATATGCAGCTGGTAACACCGTACCTATTCCCTTCTTGAGGGCGACAGATATATCGCCCA TCGCTCTTTTGACAGACAATGTCCTAGGAGGTAGTCGTGACGACAATGGTGGAGCTGCTGCAGCAGAAGCGTTGCAGGAGCTTTTTACTGGTGACGGCTT GTCCAGAAAGGGCCGGAGGGTACAAAACGAGATGCCCTTACCACCAAGTGTATACCAGAGACTATGTTCAAGCTCAACGCTTATGAATCTGGCACAAGCT TTAGCTTACCACAAAATGTGTTATGAGGAGATGCCACTTCAAGATTTGCAGGTGACACAAGAACAGCAAACCATTCAGAACCTTACAGACACGCTACGGA CCATCCTCCGACTGTAG
AA sequence Show only first row Show all	>Lus10036915 pacid=23171168 polypeptide=Lus10036915 locus=Lus10036915.g ID=Lus10036915.BGIv1.0 annot-version=v1.0 MDHPPTYRRSWKPPAPTTDIYSTFVVHDSSSESEPDPKPRPARSSSSRLPNTTTDDIYATTVYKGGDLAKSDGEEDEEDEESLPPLLKRLPKDFGGGMDD DLAEDAGDDYDGDFGTMIVKTNRGGGGGGRQRNLSSSSTTAKSPWSSSSYGNFSKRDYGGDEEDEDEDDSGDGEGFGTFVVKSTLSGTVVRKSGGDGGSG STMGRAVASMQGAMNLGFGNQRRRRSGSLSSQGDDSRHHPHTKVSASSIPDSVTREDPTTKYELLNELGKGSYGAVYKARDLRTSELVAIKVISLSEGEE GYEEIRGEIEMLQQCSHPNVVRYLGSYQGEDYLWIIMEYCGGGSVADLMNVTEEALEENQIAYICREALKGLAYLHSIFKVHRDIKGGNILLTEQGEVKL GDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSSVHPMRVLFMISIEPAPMLEDKEKWSLIFHDFVAKCLTKE PRSRPPAFEMLKHKFIERCKVGASAMLPKIEKARKVRAAIAMQPQNLDPGVPEPPEQSNSNEEYEATVPSRRPQEASELPSSSVGGQCPVGGDFGTFIVH VGDEGNKTMKHDQFRPINETSDIAEGATTVIGVQPSESWKDSSTNGDAAKKILLGDASQTLEAFSSPFGTSTVTPKIKNLSQTVRGEGGKSATTSKGENA SKRVFALQDKLWSIYAAGNTVPIPFLRATDISPIALLTDNVLGGSRDDNGGAAAAEALQELFTGDGLSRKGRRVQNEMPLPPSVYQRLCSSSTLMNLAQA LAYHKMCYEEMPLQDLQVTQEQQTIQNLTDTLRTILRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69220		SIK1	Protein kinase superfamily pro...		Lus10036915 [exp]	0	1
AT1G16590		REV7, ATREV7	DNA-binding HORMA family prote...		Lus10006836 [exp]	1.4	0.7702
AT3G13670			Protein kinase family protein ...		Lus10042455 [exp]	5.4	0.7797
AT1G52420			UDP-Glycosyltransferase superf...		Lus10037523 [exp]	6.6	0.7629
AT4G19190			zinc knuckle (CCHC-type) famil...		Lus10037279 [exp]	7.7	0.7207
AT1G10390			Nucleoporin autopeptidase (.1....		Lus10008288 [exp]	11.9	0.7660
AT1G79020			Enhancer of polycomb-like tran...		Lus10033318 [exp]	13.4	0.7423
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Lus10020928 [exp]	14.2	0.7372
AT4G14720	ZIM	TIFY4B, PPD2	PEAPOD 2, TIFY domain/Divergen...		Lus10014700 [exp]	15.5	0.7117
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10004490 [exp]	16.1	0.7611
AT5G51150			Mitochondrial import inner mem...		Lus10043005 [exp]	18.7	0.7199

Compare expression of checked genes

Lus10036915 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.