Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26370 650 / 0 RID1 RNA helicase family protein (.1) AT1G32490 374 / 4e-116 EMB2733, ESP3 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) AT2G35340 372 / 2e-115 MEE29 maternal effect embryo arrest 29, helicase domain-containing protein (.1) AT3G26560 374 / 3e-115 ATP-dependent RNA helicase, putative (.1) AT1G69240 354 / 4e-115 RHS9, ATMES15 ROOT HAIR SPECIFIC 9, ARABIDOPSIS THALIANA METHYL ESTERASE 15, methyl esterase 15 (.1) AT1G26360 343 / 4e-111 ATMES13, SP1L1 ARABIDOPSIS THALIANA METHYL ESTERASE 13, methyl esterase 13 (.1) AT2G47250 348 / 2e-109 RNA helicase family protein (.1) AT3G62310 346 / 1e-108 RNA helicase family protein (.1) AT3G29770 324 / 2e-104 ATMES11 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) AT4G18465 330 / 6e-103 RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037067 [exp] 881 / 0 AT1G26370 927 / 0.0 RNA helicase family protein (.1) Lus10037068 [exp] 523 / 0 AT1G69240 365 / 5e-124 ROOT HAIR SPECIFIC 9, ARABIDOPSIS THALIANA METHYL ESTERASE 15, methyl esterase 15 (.1) Lus10036783 [exp] 377 / 5e-116 AT3G26560 1790 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10030707 [exp] 350 / 5e-114 AT3G29770 494 / 4e-175 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Lus10013193 [exp] 344 / 8e-112 AT3G29770 493 / 8e-175 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Lus10031647 [exp] 360 / 3e-110 AT1G32490 1545 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10033690 [exp] 360 / 6e-109 AT1G32490 1399 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10037145 [exp] 353 / 8e-108 AT3G26560 1529 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10005261 [exp] 325 / 2e-100 AT3G62310 1300 / 0.0 RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G096800 [exp] 747 / 0 AT1G26370 1019 / 0.0 RNA helicase family protein (.1) Potri.015G024400 [exp] 376 / 7e-116 AT3G26560 1768 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.017G096900 [exp] 350 / 1e-114 AT3G29770 463 / 2e-163 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Potri.008G096900 [exp] 349 / 5e-114 AT1G26360 379 / 2e-129 ARABIDOPSIS THALIANA METHYL ESTERASE 13, methyl esterase 13 (.1) Potri.004G116500 [exp] 348 / 1e-113 AT3G29770 499 / 1e-177 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Potri.012G034200 [exp] 368 / 7e-113 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.015G008700 [exp] 362 / 1e-111 AT1G32490 1541 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Potri.002G192500 [exp] 340 / 2e-106 AT3G62310 1276 / 0.0 RNA helicase family protein (.1) Potri.014G117900 [exp] 339 / 6e-106 AT3G62310 1252 / 0.0 RNA helicase family protein (.1) Potri.010G172500 [exp] 337 / 4e-101 AT5G13010 1715 / 0.0 embryo defective 3011, RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] PF04408 [flax] [poplar] HA2 Helicase associated domain (HA2)
Representative CDS sequence Show only first row Show all	>Lus10036917 pacid=23171293 polypeptide=Lus10036917 locus=Lus10036917.g ID=Lus10036917.BGIv1.0 annot-version=v1.0 ATGTCTGCCAGTTTAGATGCTCGAGTGTTTTCTGAGTACTTCGGTGGTGCTAGAGCTGTCCACGTTCAAGGCCGGCAACATCCTGTTGACATACTTTATA CTCTTCAACCTGAAAAAGATTATGTTGATGCAGCCTTAGTTACCATATTTCAGATTCATTTGGAGGAGAGCCCTGGTGATGTACTTGTATTCTTGACTGG GCAAGAAGAGATTGAAGCAGTTGAGAGACTTGTTCAGGAACGACTTCATTCACTGCCTGAAGCCAGTCGAAAGCTGTTAACAGTTCCAATATTCTCATCC CTTCCATCAGAGAAGCAAATGCGTGTATTTGCTCCAGCCCCTGACAGGTACCGTAAGGTGGTATTATCAACAAATATAGCTGAGACCTCTGTGACAATAC CTGGAATCAAATATGTGATTGATCCTGGATTTGTAAAAGCACGCACTTATAACCCATCTAAGGGGATGGAGTCTTTGATTATTATTCCAACTTCAAAAGC TCAAGCTCTTCAAAGGAGTGGTCGTGCTGGGCGAGAAGGGCATGGGAAATGCTTCCGTCTTTACCCTGAGAGTGAATTTGAGAAACTTGAGGATTCCACA AAACCAGAAATCAAGCGGTGCAACCTCTCAAATGTTATTTTGCAGCTTAAAGCACTTGGTGTTGATGATATATTCGGGTTTGACTTCATTGAAAAACCAT CTAGGGCAGCTATTGTCAAGTCATTGGAGCACTTGTTTCTGCTGGGTGCTTTAACAGATGAGTGTAAGCTATCTGATCCAGTGGGGCATCAGATGGCTCG CCTTCCTTTGGACCCTATTTATTCTAAAGCTCTTATTCTAGCCAGTGAATTCAACTGTTTGGAAGAAATGTTGATTACCGTTGCAATGCTCTCTGTGGAC TCCATCTTCTATATTCCACGTGAAAAGATAGATGAATCAAGAAAAGCAGCTAAATGCTTCGCGAGTCCCGATGGGGACCACATTACTCTAATAAATGTAT ATCGAGCAGCGAATGATCTTTTGCAAAAAAGTAACAATGTTCATATGGATAAAAGTGAGAAAAATATTAAAGGCAACGGTGAAAAGGTTTTCAAAAGATG GTGCAAGGCAAATTTTATCAATGCTCGATCTGTGAAGCATGCACGGGATATACACAGTCAAATTCGGGGGCATCTGGAACAAATGGGTCTTCGGATTACT TCTTGTGGAGATGATATGCTCGAGTTCTGCAGATGTCTTTCTGCGTCATTTTTTATTAATGCAGCTTTGAAGCAGCCGGATGGAACTTACAGGAAGGTTG TGGAAGCTCCTGCAATATCCTTTCGGTCTTGGTGCAAAGGAGAAGAATTGAAGATCGAAGAGCTTGAAACTAGCCATTTCGTTCTTGTTCATGGAGGTGG TTTTGGAGCCTGGTGCTGGTACAAAACTGTGGCGTACCTTCAAGAAGTCGGATTCAAAGTTGATGCAGTGAACTTAATTGGTTTTGGTGCCAGTTTGTCT GATTCAACTAACATCTGCACTCTACCTCAATACGTGAAGCCACTTACCGATGTTCTCGATAAGCTTGGCGAAGAGCAAAAGGTGATTATTGTCAGCCATG ATCTGGGAGGTGCTTGTATCTCGTATGTTATGGAGCAACATCCTTCGAAGATCTCGAAAGCTGTTTTTGTTGCATCTACGATGATGTCAAATGGTCAGAG CGCACTCGATCTACTGTCCCAAACCCAACAGACAGATTCTGAGGATCCCATGCAAAAAGCTTACCTTTTCCTCTACGGCAATGGCAAAGAAAACCCTCCA ACTTCAATTGATCTGGACAAGGAGATCTGCAGAGACCTGTTATTCCATCACAGTTCTGCCAGAGACAAAGCACTGGCAGCAGTGTCGATGAGGCCGATCC CATTCGGACCAATCGTGGAGAAAATCATCCTCTCCAACAAAAACTACGGATCCATCAGGAGGTTTTATGTTAAAACACAAGATGATCGTGCAATCCCCTC CTCACAACAGGAAGCCATGATTCAGTCCAACCCTCCAGAGCAGGTCTTCCAAATCAAGGGCTCCGATCATGCCCCGTTCTTCTCCAAGCCACAGTCTTTG CACAGGATATTGTTACAGATCTCGCAGATTTCGTGA
AA sequence Show only first row Show all	>Lus10036917 pacid=23171293 polypeptide=Lus10036917 locus=Lus10036917.g ID=Lus10036917.BGIv1.0 annot-version=v1.0 MSASLDARVFSEYFGGARAVHVQGRQHPVDILYTLQPEKDYVDAALVTIFQIHLEESPGDVLVFLTGQEEIEAVERLVQERLHSLPEASRKLLTVPIFSS LPSEKQMRVFAPAPDRYRKVVLSTNIAETSVTIPGIKYVIDPGFVKARTYNPSKGMESLIIIPTSKAQALQRSGRAGREGHGKCFRLYPESEFEKLEDST KPEIKRCNLSNVILQLKALGVDDIFGFDFIEKPSRAAIVKSLEHLFLLGALTDECKLSDPVGHQMARLPLDPIYSKALILASEFNCLEEMLITVAMLSVD SIFYIPREKIDESRKAAKCFASPDGDHITLINVYRAANDLLQKSNNVHMDKSEKNIKGNGEKVFKRWCKANFINARSVKHARDIHSQIRGHLEQMGLRIT SCGDDMLEFCRCLSASFFINAALKQPDGTYRKVVEAPAISFRSWCKGEELKIEELETSHFVLVHGGGFGAWCWYKTVAYLQEVGFKVDAVNLIGFGASLS DSTNICTLPQYVKPLTDVLDKLGEEQKVIIVSHDLGGACISYVMEQHPSKISKAVFVASTMMSNGQSALDLLSQTQQTDSEDPMQKAYLFLYGNGKENPP TSIDLDKEICRDLLFHHSSARDKALAAVSMRPIPFGPIVEKIILSNKNYGSIRRFYVKTQDDRAIPSSQQEAMIQSNPPEQVFQIKGSDHAPFFSKPQSL HRILLQISQIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26370		RID1	RNA helicase family protein (....		Lus10036917 [exp]	0	1
AT4G32420			Cyclophilin-like peptidyl-prol...		Lus10008079 [exp]	6.0	0.8690
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Lus10016367 [exp]	6.1	0.8866
AT5G52820			WD-40 repeat family protein / ...		Lus10039597 [exp]	6.3	0.8640
AT1G34360			translation initiation factor ...		Lus10024699 [exp]	7.1	0.8558
AT2G40720			Tetratricopeptide repeat (TPR)...		Lus10030522 [exp]	8.0	0.8722
AT1G51560			Pyridoxamine 5'-phosphate oxid...		Lus10034828 [exp]	13.2	0.8410
AT3G16840			P-loop containing nucleoside t...		Lus10023706 [exp]	17.2	0.8393
AT3G24320		CHM1, ATMSH1, C...	CHLOROPLAST MUTATOR, MUTL prot...		Lus10014462 [exp]	17.2	0.8627
AT5G04290		SPT5L, KTF1	SPT5-LIKE, kow domain-containi...		Lus10038680 [exp]	19.0	0.8473
AT1G30010			Intron maturase, type II famil...		Lus10028124 [exp]	25.0	0.8533

Compare expression of checked genes

Lus10036917 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.