Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13700 382 / 2e-135 PGL1 6-phosphogluconolactonase 1 (.1) AT5G24400 274 / 8e-92 PGL3, EMB2024 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) AT3G49360 232 / 3e-76 PGL2 6-phosphogluconolactonase 2 (.1) AT5G24420 224 / 3e-73 PGL5 6-phosphogluconolactonase 5 (.1) AT5G24410 215 / 1e-69 PGL4 6-phosphogluconolactonase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037065 [exp] 521 / 0 AT1G13700 383 / 1e-135 6-phosphogluconolactonase 1 (.1) Lus10022352 [exp] 281 / 1e-94 AT5G24400 382 / 2e-133 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G157200 [exp] 440 / 4e-158 AT1G13700 383 / 1e-135 6-phosphogluconolactonase 1 (.1) Potri.008G097200 [exp] 431 / 6e-154 AT1G13700 386 / 6e-136 6-phosphogluconolactonase 1 (.1) Potri.012G024400 [exp] 298 / 2e-101 AT5G24400 384 / 3e-134 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.015G007200 [exp] 297 / 4e-101 AT5G24400 395 / 1e-138 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.015G007300 [exp] 278 / 2e-94 AT5G24400 357 / 2e-124 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.012G020100 [exp] 189 / 9e-60 AT5G24400 229 / 9e-75 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.015G008401 [exp] 58 / 4e-11 AT5G24400 77 / 3e-18 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0246 [flax] [poplar] ISOCOT_Fold PF01182 [flax] [poplar] Glucosamine_iso Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
Representative CDS sequence Show only first row Show all	>Lus10036919 pacid=23171242 polypeptide=Lus10036919 locus=Lus10036919.g ID=Lus10036919.BGIv1.0 annot-version=v1.0 ATGGCGCTTGCTGGGGATGAAAGAGGGGAATTGAGGGTTCATGAGAGTTTGGATGAGCTCAGCACTGATTTGGCAGACTATATCTCTGAGCTATCTGAGG CTTCTGTCAAAGAGAGAGGCGACTTTGCCATTGCCTTGTCTGGTGGTTCTCTCATTGGTCTAATGGGAAAACTGTGTGAAGCTCCTTATAGCAAGACTGT GGACTGGTCTAAATGGTACATATTCTGGGTTGATGAACGTGTGGTTTCGAAGAACCATGCTGACAGCAACTATAAGCTTGCAAAAGATGGCCTTTTGTCC AAGGTCCCCATTGTCCCGAGCCATGTCCACTCGATAAACGACTCGGTATCAGCAGAGGAGGCAGCGGATGATTACGAATTCGCCATCCGACAGCTGGTGA AAACGAGGACAGTCAATGTATCCGACATAAGTGACTGCCCGAAGTTCGATCTCATACTTCTAGGCATGGGACGAGATGGCCATGTTGCATCCCTATTCCC TAACCACCCGGCACTCAACGAAAAAGACGAATGGGTCACCTTCATCACCGATTCGCCCAAACCCCCACCGGAGAGAATCACATTCACTCTCCCTGTCATC AACTCGGCATCCAATGTAGCCATAGTCGCAACAGGTGAGGGCAAAGCAGATGCTTTACACTTGGCAATCGAAGGATCAGACGGCTCGTTGCTGCTGCCTG CACAAATGGTGCAGCCGATGAAAGGGAATCTGGTTTGGTTTTTGGACAAGCCGGCTGCTTCGAAACTCGAAGGTTATAAGCTCTGA
AA sequence Show only first row Show all	>Lus10036919 pacid=23171242 polypeptide=Lus10036919 locus=Lus10036919.g ID=Lus10036919.BGIv1.0 annot-version=v1.0 MALAGDERGELRVHESLDELSTDLADYISELSEASVKERGDFAIALSGGSLIGLMGKLCEAPYSKTVDWSKWYIFWVDERVVSKNHADSNYKLAKDGLLS KVPIVPSHVHSINDSVSAEEAADDYEFAIRQLVKTRTVNVSDISDCPKFDLILLGMGRDGHVASLFPNHPALNEKDEWVTFITDSPKPPPERITFTLPVI NSASNVAIVATGEGKADALHLAIEGSDGSLLLPAQMVQPMKGNLVWFLDKPAASKLEGYKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13700		PGL1	6-phosphogluconolactonase 1 (....		Lus10036919 [exp]	0	1
					Lus10021100 [exp]	9.8	0.8399
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10043325 [exp]	10.8	0.8191
AT2G27285			Coiled-coil domain-containing ...		Lus10039072 [exp]	11.1	0.8037
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Lus10015238 [exp]	20.5	0.7869
AT5G43060			Granulin repeat cysteine prote...		Lus10019827 [exp]	25.3	0.7842
AT5G58375			Methyltransferase-related prot...		Lus10042227 [exp]	27.0	0.7863
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Lus10029820 [exp]	28.9	0.7869
AT1G07940			GTP binding Elongation factor ...		Lus10023497 [exp]	29.1	0.7808
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10006302 [exp]	33.1	0.7253
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10021671 [exp]	33.5	0.7837

Compare expression of checked genes

Lus10036919 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.