Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69200 528 / 0 FLN2 fructokinase-like 2 (.1) AT3G54090 285 / 6e-91 FLN1 fructokinase-like 1 (.1) AT5G51830 145 / 4e-39 pfkB-like carbohydrate kinase family protein (.1) AT3G59480 137 / 3e-36 pfkB-like carbohydrate kinase family protein (.1) AT4G10260 135 / 1e-35 pfkB-like carbohydrate kinase family protein (.1) AT2G31390 134 / 2e-35 STH pfkB-like carbohydrate kinase family protein (.1) AT1G06030 129 / 2e-33 pfkB-like carbohydrate kinase family protein (.1) AT1G06020 128 / 5e-33 pfkB-like carbohydrate kinase family protein (.1) AT1G66430 128 / 2e-32 pfkB-like carbohydrate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037064 [exp] 810 / 0 AT1G69200 592 / 0.0 fructokinase-like 2 (.1) Lus10021118 [exp] 270 / 9e-85 AT3G54090 676 / 0.0 fructokinase-like 1 (.1) Lus10017191 [exp] 265 / 1e-82 AT3G54090 679 / 0.0 fructokinase-like 1 (.1) Lus10027401 [exp] 149 / 1e-40 AT5G51830 535 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10031668 [exp] 142 / 5e-38 AT5G51830 522 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10028089 [exp] 137 / 1e-36 AT4G10260 452 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Lus10013611 [exp] 133 / 8e-35 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10026865 [exp] 132 / 2e-34 AT3G59480 560 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10009526 [exp] 130 / 1e-33 AT2G31390 553 / 0.0 pfkB-like carbohydrate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G097300 [exp] 582 / 0 AT1G69200 598 / 0.0 fructokinase-like 2 (.1) Potri.016G109600 [exp] 263 / 2e-82 AT3G54090 630 / 0.0 fructokinase-like 1 (.1) Potri.015G134900 [exp] 156 / 3e-43 AT5G51830 456 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Potri.012G132700 [exp] 154 / 3e-42 AT5G51830 460 / 1e-163 pfkB-like carbohydrate kinase family protein (.1) Potri.004G089300 [exp] 137 / 6e-36 AT1G66430 527 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.019G063600 [exp] 133 / 5e-35 AT4G10260 550 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.017G029000 [exp] 130 / 1e-33 AT3G59480 568 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.007G129700 [exp] 129 / 1e-33 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.017G126300 [exp] 115 / 3e-28 AT1G66430 519 / 0.0 pfkB-like carbohydrate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [flax] [poplar] Ribokinase PF00294 [flax] [poplar] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Lus10036920 pacid=23171015 polypeptide=Lus10036920 locus=Lus10036920.g ID=Lus10036920.BGIv1.0 annot-version=v1.0 ATGGGGATTCCTGCAGCTTGGGAAGAAGAAGAAGAAGATGATGATGATGATGAAGAAGAAGAAGAAGAAGGGAAAACTGTTGTTGTTGAGAAAGTTAAGA GGGTAAGGAAGAGTAGGAAGAAAGATGATCATGTCAACAATGAGTCTGAACTTAAATCGAAACCGGAATTCCATACCAGTGATGGGGTTGAACAAGCTTC TTCCATAGTTGTTTCCTTTGTGGAGGATGATTCAAGTGATGTGGAGGAAGAAGAAGAGGGAGCTTCATTTCGTTCCAATGTGGAGGAGTTGAGCGATGGG GATCTAGACTTTTTGGATAAAGATGAAGGAGGAAGAGAGGATATAAGCGGAACTTACGGATGGCCTCCGCTCGTGTGTTGCTTCGGAGCAGCACAACACG CTTTCGTGCCTTGCGGGAGGCGAGCTAACAGGCTACTGAACTACGAAATCCACGACAGGATGAGGGATGCGTATTGGGAACCGGACAGGTTCATTAGGGC TCCCGGAGGATGTGCTGGAGGTGTTGCGGTTGCTCTCGCAAGCTTGGGTGGTAAAGTTGCCTTCATGGGAAAGCTAGGGGATGACGATTTCGGTAAGGCT ATGTTGTATTATATGAATGTGAGTAAAGTCCAGACACGTTCGGTGATCGTGGATGGTAAGAGGCCAACGACGGTTTCGAGGATCAGGCTTGCCAAGCGAG GACGGTTTCGAATGATTTGTACTAGATCCTCTGCTGAAGATTCTTTGTCCAAGTCTGAGATCAACATAGATCTTCTTAGGGAGGCGAAGATGTTCTACTT CAACACTCACCCTCTGCTCGATCGAGGCATGCGGTCATCTACACTATACGCGATGAAGATATCGAAGAAACTCGGAGGAGTCATCTTCTACGATGTAAAC CTCCCGCTGTCACTTTGGCAGTCTCGTGAAGAAACCAACGAGTTCATACGAGACGCATGGAACCATGCGAATGTTATCGAAGTAACCAAGCAAGAACTGG AGTTTCTATGCGGAATAGAGCCCACCGAGGAGTTTGATACGAGGGACAACGACGATTCTAAGTTTGTCCATTATGGCAAAGAAGTCATTGATCAGCTCTG GCACGAAAACCTTCAAGTACTGTTTGTAACCAACGGTACTTCCGAGATACACTACTATACAAAGGAGCACAGTGGTTCGGTTCTTGGCATGGAGGATCCT CCTCTTACCCCTTTCACTGCTGACATGTCAGCATCTGGAGATGGCATTGTTGCAGGTCTGATGAGAATGTTAACGGTTCAGCCACACCTCATTACCGATG AAGGCTACTTGAAACGCTCGATCCAGTATGCTATCGACTGTGGAGTCATAGATCAATGGCTACTCACAAGAACACGGGGTTTCCCTCTGCTGGAAGAGAT GGATGAAGTGGAACCTGATCCTAGTGGTATAGTATCTATAACTGAGCACGAGTCCAGAGTAGTTTTGTCACCAAGCCAGTAA
AA sequence Show only first row Show all	>Lus10036920 pacid=23171015 polypeptide=Lus10036920 locus=Lus10036920.g ID=Lus10036920.BGIv1.0 annot-version=v1.0 MGIPAAWEEEEEDDDDDEEEEEEGKTVVVEKVKRVRKSRKKDDHVNNESELKSKPEFHTSDGVEQASSIVVSFVEDDSSDVEEEEEGASFRSNVEELSDG DLDFLDKDEGGREDISGTYGWPPLVCCFGAAQHAFVPCGRRANRLLNYEIHDRMRDAYWEPDRFIRAPGGCAGGVAVALASLGGKVAFMGKLGDDDFGKA MLYYMNVSKVQTRSVIVDGKRPTTVSRIRLAKRGRFRMICTRSSAEDSLSKSEINIDLLREAKMFYFNTHPLLDRGMRSSTLYAMKISKKLGGVIFYDVN LPLSLWQSREETNEFIRDAWNHANVIEVTKQELEFLCGIEPTEEFDTRDNDDSKFVHYGKEVIDQLWHENLQVLFVTNGTSEIHYYTKEHSGSVLGMEDP PLTPFTADMSASGDGIVAGLMRMLTVQPHLITDEGYLKRSIQYAIDCGVIDQWLLTRTRGFPLLEEMDEVEPDPSGIVSITEHESRVVLSPSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69200		FLN2	fructokinase-like 2 (.1)		Lus10036920 [exp]	0	1
AT1G16790			ribosomal protein-related (.1)		Lus10034801 [exp]	5.9	0.8145
AT1G69200		FLN2	fructokinase-like 2 (.1)		Lus10037064 [exp]	7.6	0.8375
AT1G10522			unknown protein		Lus10030655 [exp]	12.0	0.8492
AT1G16790			ribosomal protein-related (.1)		Lus10033346 [exp]	20.5	0.8266
AT1G71920		HISN6B	HISTIDINE BIOSYNTHESIS 6B (.1....		Lus10005564 [exp]	24.3	0.8104
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Lus10040068 [exp]	25.2	0.7970
AT1G02280		PPI1, ATTOC33, ...	PLASTID PROTEIN IMPORT 1, tran...		Lus10010292 [exp]	30.5	0.7812
AT1G05970			RNA-binding (RRM/RBD/RNP motif...		Lus10033646 [exp]	33.5	0.7729
AT1G57750		MAH1, CYP96A15	MID-CHAIN ALKANE HYDROXYLASE 1...		Lus10002523 [exp]	37.1	0.8043
AT4G39470			Tetratricopeptide repeat (TPR)...		Lus10035707 [exp]	37.4	0.7161

Compare expression of checked genes

Lus10036920 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.