Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37170 800 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G23330 496 / 4e-167 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 489 / 2e-163 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G02750 484 / 1e-161 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 473 / 3e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 454 / 3e-150 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G16835 449 / 2e-149 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02010 445 / 6e-146 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G20230 443 / 6e-146 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G46790 439 / 2e-145 CRR2 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016425 [exp] 478 / 1e-158 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10022629 [exp] 463 / 7e-155 AT2G41080 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013540 [exp] 459 / 9e-152 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 457 / 3e-151 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028593 [exp] 454 / 8e-151 AT5G16860 879 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030908 [exp] 468 / 1e-149 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030053 [exp] 448 / 3e-148 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030581 [exp] 462 / 8e-148 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10035164 [exp] 449 / 2e-147 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G091600 [exp] 937 / 0 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 494 / 4e-166 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G085500 [exp] 482 / 2e-160 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.010G136200 [exp] 476 / 1e-158 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.012G041200 [exp] 478 / 3e-158 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G048800 [exp] 471 / 1e-156 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G075000 [exp] 456 / 4e-152 AT2G41080 755 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G081700 [exp] 449 / 8e-149 AT4G16835 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G322100 [exp] 445 / 1e-147 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G354400 [exp] 444 / 3e-147 AT5G46460 863 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10036921 pacid=23171078 polypeptide=Lus10036921 locus=Lus10036921.g ID=Lus10036921.BGIv1.0 annot-version=v1.0 ATGCGGCTCCAGAAATTCAAATCCTTACGCTCGCATCCTGTTTTCCAGCTAAACGAAATCCTCACCTCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTC AAACGCAGTCTCGGCCACCACCAGCTGATGATTACGTCACTCGCTTATGCCGAGCGAACAGGTTTAGAGAAGCAATTGACGTACTGTGCGTGGATAATCG CGTGAAAGATGCAATTCGAATACTTAACCAGATGGATAAACCTTCATCTCCAATCTACTCAGCCGTCATACAGTCTTGTCTAAAGACACGGTCCCTGGAA AGTGGGAGGAAAGTTCATCAACACATCAAACAATCCGGGTTCTTGCCAGGTCAGTTCATCTCGAATCGGTTGCTCGACATGTACGTGAAATGCGACGGAA TGGACGAAGCCCGTAACTTTTTTAACGAAATGGGCCAAAAGGATTTGTGTTCCTGGAACGTTTTGCTATCTGGATATGCGCGATTTGGGTTGCTTGAAGA AGCAAGAAAGCTGTTCGATGAAATGCCTGGCAGAGACCATTTCACTTGGAACGCAATGATTTCGGGCTATGTGCGTTATGATATGCCTAGAGAGGCTTTG GATTTGTGTAGAATGATGAACAAGTGTCCAAATTCCTCGCAGTGTAATAATAATAAGTTTATAGTTTCCAGTGCCATTGCTGCTGCTGCAGTTCTTTCGT GTTTAAGAATCGGCAAAGAGATTCATGGTCATATAATCAGAACAGGATTGGACTCGGATCAGGTGGTGTGGATTTCTCTCTCTGACATGTACGGAAAATG CAGGAGCATTGATCAAGCAAGGTATATTTTTGACAGGATGGTGGATAAGGATGATGTTACCACTTGGACGACTATGATCAGTAGGTATTTCGAAGATGGT AGGAGATCGGACGGTCTCGATCTCTTTAGAGACTTGGTAGAATCAGGGACGATACGGCCAAATGAATTTACTTTTGCTGCGGTTTTTAATGCTTGCACTG AGGAGCTTGGGAAGCAAGTACATGGATACATGACGAGAATCTGTGCAAATCCAGTCTCTTTTGCAGGAAGCGCTCTTGTTCACATGTATTCGAAATGCGG AAACATGGACAGTGCTGAAAGAGTGTTTAAATTGATGAAACAGCCGGATTTGGTTTCCTGGACTGCTTTGATTGCTGGCTATGCACAAAATGGACGTTCT AACGAAGCTCTTTGGTGCTTTGAGCTGCTACTGAAGTCCGAAGTCCGTCCTGATAGCGTAGCTTTCGTTGGAGTTCTTTCTGCTTGTGTTCATGCTGGTT TGGTCGATGAAGGACTTGCGTATTTTTATTCAATAGAGGAGAAACATGGGCTGACTCACACTGCTGGTCACTACGCTTGTGTTATCGATCTACTGGCGCG TAGTGGGAGATTCGAAGAAGCCGAACGTATTATCAGTGAGATGAAGAACATGAAGCCTGACAAGTACATTTGGGCTTCCTTGCTTGGAGGTTGCAGAATC CATAAGAACGTCGAACTTGCTGAGAAGTCTGCGGAAGCATTGTTCGAGATCGAACCGGGGAATCCAGCTACTTATGTGACAATGGCGAATATATACGCCA CAGCAGGGAGATGGTCCGAGGTGGCCAAGATCAGAAAGCTTATGGATGGGAGAGGAGTGGTGAAGAAGAAACCGGGTAAGAGTTGGATTGAGATCAAGAG AAAGACGCATCCTTTTTGTGTTGGAGACAAATCCCACCCCGATTCGAAACGAATATACGAGTTCCTTTGCGAGGTATCGATGAGGATGAAGGGAGAAGGG TTTGTTGGTGATACAAACTCTGCTTTGCACGATGTTGAGGAAGAACAGAAAGAGCAGCACCTTTCTTACCACAGCGAGAAGCTTGCAGTTGCCTATGGGA TCATTTCGACTCCAGCTGGCACACCGATCAAGGTGTTCAAGAATTTGAGGACTTGTGTGGACTGTCACGAAGCGATTAAGTTTATCTCGAAGATTGTACG TAGGAAGATAACTGTGAGGGATTCGGCTAGGTTCCATTGTTTTGAGAACGGGAATTGTTCTTGTGCAGACTACTGGTGA
AA sequence Show only first row Show all	>Lus10036921 pacid=23171078 polypeptide=Lus10036921 locus=Lus10036921.g ID=Lus10036921.BGIv1.0 annot-version=v1.0 MRLQKFKSLRSHPVFQLNEILTSSSSSSSSSSSQTQSRPPPADDYVTRLCRANRFREAIDVLCVDNRVKDAIRILNQMDKPSSPIYSAVIQSCLKTRSLE SGRKVHQHIKQSGFLPGQFISNRLLDMYVKCDGMDEARNFFNEMGQKDLCSWNVLLSGYARFGLLEEARKLFDEMPGRDHFTWNAMISGYVRYDMPREAL DLCRMMNKCPNSSQCNNNKFIVSSAIAAAAVLSCLRIGKEIHGHIIRTGLDSDQVVWISLSDMYGKCRSIDQARYIFDRMVDKDDVTTWTTMISRYFEDG RRSDGLDLFRDLVESGTIRPNEFTFAAVFNACTEELGKQVHGYMTRICANPVSFAGSALVHMYSKCGNMDSAERVFKLMKQPDLVSWTALIAGYAQNGRS NEALWCFELLLKSEVRPDSVAFVGVLSACVHAGLVDEGLAYFYSIEEKHGLTHTAGHYACVIDLLARSGRFEEAERIISEMKNMKPDKYIWASLLGGCRI HKNVELAEKSAEALFEIEPGNPATYVTMANIYATAGRWSEVAKIRKLMDGRGVVKKKPGKSWIEIKRKTHPFCVGDKSHPDSKRIYEFLCEVSMRMKGEG FVGDTNSALHDVEEEQKEQHLSYHSEKLAVAYGIISTPAGTPIKVFKNLRTCVDCHEAIKFISKIVRRKITVRDSARFHCFENGNCSCADYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37170			Pentatricopeptide repeat (PPR)...		Lus10036921 [exp]	0	1
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Lus10000312 [exp]	10.6	0.6441
AT5G40400			Pentatricopeptide repeat (PPR)...		Lus10013077 [exp]	13.0	0.6301
AT5G50990			Tetratricopeptide repeat (TPR)...		Lus10032531 [exp]	14.4	0.6355
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Lus10004521 [exp]	15.3	0.6315
AT1G26580			unknown protein		Lus10037097 [exp]	24.7	0.6154
AT3G59910			Ankyrin repeat family protein ...		Lus10005306 [exp]	39.5	0.5871
AT5G07610			F-box family protein (.1)		Lus10014320 [exp]	102.9	0.5340
AT1G11050			Protein kinase superfamily pro...		Lus10029711 [exp]	112.3	0.5191
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Lus10024723 [exp]	118.7	0.5549
AT3G48810			Pentatricopeptide repeat (PPR)...		Lus10009661 [exp]	148.2	0.4864

Compare expression of checked genes

Lus10036921 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.