Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30000 638 / 0 Dihydropterin pyrophosphokinase / Dihydropteroate synthase (.1.2) AT1G69190 607 / 0 Dihydropterin pyrophosphokinase / Dihydropteroate synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037062 [exp] 955 / 0 AT4G30000 669 / 0.0 Dihydropterin pyrophosphokinase / Dihydropteroate synthase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G097400 [exp] 703 / 0 AT4G30000 748 / 0.0 Dihydropterin pyrophosphokinase / Dihydropteroate synthase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00809 [flax] [poplar] Pterin_bind Pterin binding enzyme CL0036 [flax] [poplar] PF01288 [flax] [poplar] HPPK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
Representative CDS sequence Show only first row Show all	>Lus10036922 pacid=23171336 polypeptide=Lus10036922 locus=Lus10036922.g ID=Lus10036922.BGIv1.0 annot-version=v1.0 ATGAAGCTTCTCCGGAAGCTGCTTCCCGTCAGACGGGCATTTGAATTCAACACCGCAGTTAACCGGTTTACAGGTAAAACTCACCTGAAAATCCATATCT TTGTTTCCCCCATTTCTGCAAACTTCCAATTCTTTCTCCTCCCGTTATTCAATCCAGCAGGAACTCCTTCCCGTTTCCTCCATTCCTCCGCCGAATCCGA TGAATCCGCCGTCGAGGTCCACTCACCGGAACAGGAGGTCGTGATTGCTCTAGGAAGCAACGTAGGCAACAGGATCCGCAACTTCAACGAAGCATTAGCG ATGATGAAACAATCCGGGATAGGCATAACAAGGCACGGCTGCCTGTACGAGACGGCGCCTGCTTACGTCACCGACCAGCCGCATTTCCTCAACTCAGCAG TCAGGGCAGTCACCAAGCTCCTACCACACGAGCTGCTGGGAACGCTGAAAAAGATCGAGAAGGAGATGGGCCGTACTAAAGGAATCAGGTACGGACCGAG ACCAATTGATTTGGATATATTGTTCTATGGCAGAATTAAGGTTTGTTCTGATGTTCTTACAATCCCTCATGAGAGGATATTCGAGAGGCCGTTTGTTATG GCTCCGTTGATTGACTTGCTTGGTACTGATGCGGATAACGATACTGTTGCTCACTGGTGTGCGAATTTCGATCTGTTCGAGTCGTGGGAGAAGCTTGGCG GTGAAGGTTTGATTGGGGGAGACGGTATGAAGAGGGTTTTACCAATTGGGGAAGAAGAAGAAGATAGATTGTGGGATTGGTCTAGTGGCAGAGCTTCAGT AATGGGGGTTGTTAATTTAACTCCTGATAGTTTCAGCGATGGAGGGAAGTTTCAATCCGTGGAGGATGTGGTTTCTCAGGTTCGGGTTATGATCTCGGAA GGTGTTGATATCGTCGATTTTGGTCCGCAGTCGACTAGGCCGATGGCGGATATGGTTTCGGTCCAGGAAGAGCTCGACAGGCTGATTCCGGTTATCGAAT CCGTAGCGAAAATGCCTGAGATGGACGGGAAGCTCGTCTCTGTCGATACGTTCTATTCGGAGGTTGCTTCGGAGGCGGTTAGTAACGGGGCTCATATTGT AAATGATGTTTCTGGTGGGACTTTGGATAGTAATATGAGTAAAGTTGTCGCAAAGCTCGGAGTTCCTTACGTCGTGATGCACATGAGAGGCGATCCGACG ACAATGCAAAGTGGTTCGAATTTGGACTATGGTGGTGATGTTTGCAAGCAAGTTGGTTCGGAGCTGTTTACTCGAGTTGCGGATGCAGAGAGGTGTGGAG TTCCGGCATGGAGGATAATTACTGACCCTGGACTCGGGTTCTCGAAGAACACCGAGCAGAATCTGGAGATTCTCGCGGGGCTGCAAGCTGTTCGAGATGA GATCGCGAGGAAAAGCTTGGCAGTGTCTCGTGCTCCAATGTTGATTGGACCCTCGAGGAAGAGGTTTCTCGGTGAGGTCTGCGGGCGGCCTTCGGCCGCT GATAGAGATGCTGCGACTGTTGCTTCGGTGACGGCTGGAGTTCTTGGCGGGGCGGATATTGTGAGGGTGCATAGTATAAGGGATAATGTGGATGCTGTGA AGATTTGTGAAGCTGTGATGAAATGCAGGAGATAA
AA sequence Show only first row Show all	>Lus10036922 pacid=23171336 polypeptide=Lus10036922 locus=Lus10036922.g ID=Lus10036922.BGIv1.0 annot-version=v1.0 MKLLRKLLPVRRAFEFNTAVNRFTGKTHLKIHIFVSPISANFQFFLLPLFNPAGTPSRFLHSSAESDESAVEVHSPEQEVVIALGSNVGNRIRNFNEALA MMKQSGIGITRHGCLYETAPAYVTDQPHFLNSAVRAVTKLLPHELLGTLKKIEKEMGRTKGIRYGPRPIDLDILFYGRIKVCSDVLTIPHERIFERPFVM APLIDLLGTDADNDTVAHWCANFDLFESWEKLGGEGLIGGDGMKRVLPIGEEEEDRLWDWSSGRASVMGVVNLTPDSFSDGGKFQSVEDVVSQVRVMISE GVDIVDFGPQSTRPMADMVSVQEELDRLIPVIESVAKMPEMDGKLVSVDTFYSEVASEAVSNGAHIVNDVSGGTLDSNMSKVVAKLGVPYVVMHMRGDPT TMQSGSNLDYGGDVCKQVGSELFTRVADAERCGVPAWRIITDPGLGFSKNTEQNLEILAGLQAVRDEIARKSLAVSRAPMLIGPSRKRFLGEVCGRPSAA DRDAATVASVTAGVLGGADIVRVHSIRDNVDAVKICEAVMKCRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30000			Dihydropterin pyrophosphokinas...		Lus10036922 [exp]	0	1
AT3G26590			MATE efflux family protein (.1...		Lus10036854 [exp]	3.7	0.9204
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10029406 [exp]	8.0	0.9134
AT5G48940			Leucine-rich repeat transmembr...		Lus10023677 [exp]	9.0	0.9088
AT3G07620			Exostosin family protein (.1)		Lus10008751 [exp]	11.2	0.9010
AT3G49950	GRAS		GRAS family transcription fact...		Lus10014852 [exp]	13.2	0.9076
AT1G64480		CBL8	calcineurin B-like protein 8 (...		Lus10001816 [exp]	16.8	0.9025
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Lus10033756 [exp]	17.5	0.8961
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Lus10006664 [exp]	19.8	0.9081
AT1G71750		HGPT	Hypoxanthine-guanine phosphori...		Lus10023627 [exp]	21.7	0.8245
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10010045 [exp]	25.5	0.8921

Compare expression of checked genes

Lus10036922 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.