Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67680 410 / 2e-137 SRP72 RNA-binding domain (.1) AT1G67650 392 / 7e-131 SRP72 RNA-binding domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037059 [exp] 634 / 0 AT1G67680 759 / 0.0 SRP72 RNA-binding domain (.1) Lus10011379 [exp] 522 / 0 AT1G67680 773 / 0.0 SRP72 RNA-binding domain (.1) Lus10006439 [exp] 519 / 7e-180 AT1G67680 783 / 0.0 SRP72 RNA-binding domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G216400 [exp] 462 / 6e-158 AT1G67680 767 / 0.0 SRP72 RNA-binding domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08492 [flax] [poplar] SRP72 SRP72 RNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10036924 pacid=23171238 polypeptide=Lus10036924 locus=Lus10036924.g ID=Lus10036924.BGIv1.0 annot-version=v1.0 ATGCTGCTGGAAGCTCAGATTCTTTTTCCTCTAGGACGAATGGATGCTTGTATTGATGTCTATCAAAATCTTAGGAAGTCCAAGCTCGATTCGCCAGAGA TAAATCTTGCTGCGAGTTTTATTTTAGCTGGGAGATCCTCTGAGGTGCAAAGCATGCTGGATGCACAGCGGATCAAACCATCTAGCAGCTATGACTTGGC ATTCAACGCCGCTTGTTCTCTGGTTGAAACAAATAAGAAGCAGAACAGCTGTTGCAGCAAGCAAGAAGGACGATCGCAGGAAGTCGTGGAAGCTTACACA GAGATGATTAACCCAAATCTTGCGGATGATTTGTCATCCCTAGCAGTGGCTGTGAATAACCTTGTTGCTGAAAGGGGGCCAAAAGAGGCACGAGAGCTTA TTTCAGCATTACCAGGAATGTTTGCCGACAGCGAAATGCCTGTACTCCTTCAAGCTGCAGTACTGTTCCGGGAGAAAAAGGCTACTAGAGCTGAAGAAAT ACTGGATCAGTTTTCCGAGAAGTTCCCTCTCAAGTCCAAGGTTGCCCTTCTTGCAAGGGCACAAATCGCTGCTTTTTCCGGCCCTCACCAGATTGCAGCC GACTCCTTATCAAGAATCCCCGATATCCAACACATGCTTGCCACAGTTGCCACCCTTGTCGCTCTAAAAGAGCGAGCTGGAGACATCAATGGCGCATCTA CAGTGCTCGACTCAGCAGTCAAATGGTGGACAAATGCCATGACCGAGAACAGTAAGTTGAGCATTATAGTGCAAGAAGCTGCTGCCTTCAAGGTGAGGCA CGGGCAGGAAGCTGAAGCAGCGTGCTTTTTCGAGGAACTCGTCACGAGCCATGGAAGCACCGAGGCATTAGTCGGGCTGGTCAGTACTATCGCGCATTTT GACATTGACAAGGCGGAAACTTACGAGAAGAAGTTGAAGCCATTGCCCGGTTTGAAGGGAATCAATGTTGATAGCCTGGAGAAGACATCAGGGGCTAAAC ACATCGAAGGTGGCGCCTCTCGTGTTCCATTGGTCGAAGAGAGTAAGAAAGAGAAGCAGCAGCAGAAGAAGAAGAGGAAGAGAAAGCCAAGGTACCCGAA AGGATTTGATGCGGCAAATCCAGGACCTATGCCAGACCCGGAAAGGTGGCTCCCCAAGAGGGAGAGGTCAAGCTACAAACCAAATAGAAAGGACAAGAGA GCAGCTCAAGTAAGAGGGTCCCAGGGTGCTGTAGCTAGGGATAAGACTGAAGCTCCTAGTTCTGCTGCTGCAACGAGTTCTTCGAACACCTCGAAAGCAG CCAGTAGTAGCTCCAAATCTCAGTCCAACCATTCCTCCAAATCGTCGAAGAAGAAGTCGAGGAGGTGA
AA sequence Show only first row Show all	>Lus10036924 pacid=23171238 polypeptide=Lus10036924 locus=Lus10036924.g ID=Lus10036924.BGIv1.0 annot-version=v1.0 MLLEAQILFPLGRMDACIDVYQNLRKSKLDSPEINLAASFILAGRSSEVQSMLDAQRIKPSSSYDLAFNAACSLVETNKKQNSCCSKQEGRSQEVVEAYT EMINPNLADDLSSLAVAVNNLVAERGPKEARELISALPGMFADSEMPVLLQAAVLFREKKATRAEEILDQFSEKFPLKSKVALLARAQIAAFSGPHQIAA DSLSRIPDIQHMLATVATLVALKERAGDINGASTVLDSAVKWWTNAMTENSKLSIIVQEAAAFKVRHGQEAEAACFFEELVTSHGSTEALVGLVSTIAHF DIDKAETYEKKLKPLPGLKGINVDSLEKTSGAKHIEGGASRVPLVEESKKEKQQQKKKRKRKPRYPKGFDAANPGPMPDPERWLPKRERSSYKPNRKDKR AAQVRGSQGAVARDKTEAPSSAAATSSSNTSKAASSSSKSQSNHSSKSSKKKSRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10036924 [exp]	0	1
AT3G55140			Pectin lyase-like superfamily ...		Lus10003307 [exp]	1.0	0.8275
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10010185 [exp]	4.0	0.7725
AT5G18070		DRT101	DNA-DAMAGE-REPAIR/TOLERATION 1...		Lus10007548 [exp]	6.9	0.7592
AT5G24510			60S acidic ribosomal protein f...		Lus10034864 [exp]	7.7	0.7466
AT1G66730		AtLIG6	DNA LIGASE 6 (.1)		Lus10033580 [exp]	10.8	0.7501
					Lus10021443 [exp]	11.0	0.7473
AT1G56090			Tetratricopeptide repeat (TPR)...		Lus10008024 [exp]	11.4	0.7114
AT4G21870			HSP20-like chaperones superfam...		Lus10018346 [exp]	14.4	0.7138
AT5G35400			Pseudouridine synthase family ...		Lus10022949 [exp]	19.8	0.7350
AT1G76280			Tetratricopeptide repeat (TPR)...		Lus10001597 [exp]	20.1	0.6464

Compare expression of checked genes

Lus10036924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.