Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67690 806 / 0 Zincin-like metalloproteases family protein (.1) AT5G51540 199 / 3e-54 Zincin-like metalloproteases family protein (.1) AT5G10540 187 / 3e-50 Zincin-like metalloproteases family protein (.1) AT5G65620 187 / 7e-50 Zincin-like metalloproteases family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037058 [exp] 1339 / 0 AT1G67690 858 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10004276 [exp] 185 / 7e-49 AT5G10540 1183 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10031715 [exp] 177 / 9e-47 AT5G51540 1017 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10019236 [exp] 156 / 2e-39 AT5G65620 1073 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10031136 [exp] 129 / 7e-31 AT5G51540 917 / 0.0 Zincin-like metalloproteases family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G054466 [exp] 992 / 0 AT1G67690 850 / 0.0 Zincin-like metalloproteases family protein (.1) Potri.015G129300 [exp] 199 / 3e-54 AT5G51540 1015 / 0.0 Zincin-like metalloproteases family protein (.1) Potri.014G010100 [exp] 186 / 3e-49 AT5G65620 1199 / 0.0 Zincin-like metalloproteases family protein (.1) Potri.007G004600 [exp] 175 / 3e-46 AT5G65620 1196 / 0.0 Zincin-like metalloproteases family protein (.1) Potri.009G151300 [exp] 42 / 0.0009 AT5G65620 187 / 1e-54 Zincin-like metalloproteases family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF01432 [flax] [poplar] Peptidase_M3 Peptidase family M3
Representative CDS sequence Show only first row Show all	>Lus10036925 pacid=23171088 polypeptide=Lus10036925 locus=Lus10036925.g ID=Lus10036925.BGIv1.0 annot-version=v1.0 ATGGAAGGAGAAGGACAAGGCGGCGAGGTGAGAGAGCTGGCCGAGCCGAGCATCAGCAGCAGCAGCAATCAGAAGAAGAGTGGGAGGCGGAACGTTGTCG CATTAACCGGCGGCGCGGCAGTCCTCGTCCTAGCAGCTAACTTGGCAATCTACGCCTTCAATTGTCATCGGAAGAGACAGTCTAAGAAGAAATGTCTTCA AGGCTCCAGTGTTCGGATTAATCTCTCGGCGTCTGAAATTTTGAAATTGGCTGATCGAATCATCGCTAAGTCGAAGCGAGTTCACGATGCGGTTGCTTCA GTTCCTCTTGACAAGGTCACATATGAGAACACTATTGCGCCATTGGCGGACTTGGAGGCGGAGCAGTTTCCCTTGGTTCAGTCTTGTCTATTTCCTAAGC TGGTATATGCTTCGGAGGATATACAGAAAGCAAGTGTTGAAGCTGAACGGAGAATCGATGCTTATGTTTTGGCATGCAGTCAACGAGAAGACTTGTATCG GGTAGTTAAAGCTGTTTCTGCAAAGGGAGATTGGAAGAATCCTGAAGCGAAACAATATATTAAATGCCTGGTAAGAGAATTTGAACGGAATGGTTTGAAC CTTACAGTCAGCAAAAGGGAGGAAGTCCAGCGGTTGAGAGCTAAAATAGATGAACTAAGTTTGCGTTACATTCGAAATTTACATGATGATGACACTTGTC TTCTGTTCAGTGAGACGGAGCTTGAAGGATTGCCATCAGAATATCTGAAGGCAAGTTCTCAACGAAGTTTAGAAAAGGATGCGAGTGGCAAATATAAGCT GTATATGAGAAGTAATCATGTTGTTGCTGCCCTAGAACTTTGCAAGGTAGGACAAACCAGGAAGCGAGTTGCGGTTGCATACGGGAAGAGATGTGGACAT ATCAATCTTTCAGTTTTCGAAAGTTTGGTTGAACTGCGACACAAGTATGCCCGGTTACTTGGTCACTCAAACTTTGGGGAGTATGCTGTTGATCTTAGAA TGGCAAAGACACCCACAAAGGTATTTGAGTTCCTTGAAGATATATCTGCCCGTTTGACAAATTTGGCTACTAAGGAAATCTCGGTTTTGAAGGACTTGAA GAAAAAGGAGGAAGGAGATTTTACGTTTGCCATTGAGGATCTATTGTATTATGTCAAGAGGGCCGAGGCAAACCAATTTGACCTTGACTTCAAAGCTGTT AAACAGTTCTTTCCCGTGGATTTGTTGCCTGAGAAATTTTATTTACTTCATCCAGGACTAAGATTTGAGGAAATCGGGGATGCTGAGGTTTGGCATCCTG ATGTTAGTGTCTTTTCAGCCCACGACTTGAGTTCCGGGGACCTATTGGGACATTTTTATCTTGATCTGTATACAAGGGAAGGAAAATATGGTCATACCTG TGTGCTAGCACTTCAGAATGGTGCATTATCACACAATGGCACGCGACAGATATCAGTGGCATTGCTCATATCTCGGTTACAGAAAGGAGGAGACCAAGAT CCTTGTCTGATGCGGTTCTCTGGAGTAGTCAGTCTCTTCCATGAATTTGGGCACGTGGTCCAACATATCTGCAACCGTGCACCATTTACCAAGCTATCAG GAATGTGTGTGGATCCTGATTTTGTCGAGTTACCTGCTCTGTTGCTGGAAAATTGGTGTTATGAGATCTCCACGCTGAAACTCATATCTGGGTTCCATCA GGATATCACAGTTCCCATTAAGGACGAAGCGTGCAAATCCCTTCAGCAGTGGCGGTATTCCTTTTCTGCACTTAAATTGAAGCAAGATATTCTATATTGT CTTTTTGATCAAATCATACATTCTGCTGATAATGTGGATATCGTCGAGCTATTCAAGCAGCTTCATCCAAAGGTCATGTTAGGGCTGCCGATGTTGGAAG GCACCAATCCAGCTTCGTGTTTCCCTCGTAGCGCCATAGGCTACGAAGCAGCTTGCTATAGTCGGATATGGAGCGAGGTCTTTGCAGCTGACATTTTTGC CACCAAATTTCGTAATGGCAATCTCTTGAATCACCAAGTTGGCATTGAGTTCAGGAACAAGGTATTATCCCCCGGAGGATCAAGAGACCCCATCGAACTC CTAACTGAATTTCTCGGCAGAGAACCCTCCATTCAAGCCTTCATTGACAGCAAATTAGAGCACACTTTCTAA
AA sequence Show only first row Show all	>Lus10036925 pacid=23171088 polypeptide=Lus10036925 locus=Lus10036925.g ID=Lus10036925.BGIv1.0 annot-version=v1.0 MEGEGQGGEVRELAEPSISSSSNQKKSGRRNVVALTGGAAVLVLAANLAIYAFNCHRKRQSKKKCLQGSSVRINLSASEILKLADRIIAKSKRVHDAVAS VPLDKVTYENTIAPLADLEAEQFPLVQSCLFPKLVYASEDIQKASVEAERRIDAYVLACSQREDLYRVVKAVSAKGDWKNPEAKQYIKCLVREFERNGLN LTVSKREEVQRLRAKIDELSLRYIRNLHDDDTCLLFSETELEGLPSEYLKASSQRSLEKDASGKYKLYMRSNHVVAALELCKVGQTRKRVAVAYGKRCGH INLSVFESLVELRHKYARLLGHSNFGEYAVDLRMAKTPTKVFEFLEDISARLTNLATKEISVLKDLKKKEEGDFTFAIEDLLYYVKRAEANQFDLDFKAV KQFFPVDLLPEKFYLLHPGLRFEEIGDAEVWHPDVSVFSAHDLSSGDLLGHFYLDLYTREGKYGHTCVLALQNGALSHNGTRQISVALLISRLQKGGDQD PCLMRFSGVVSLFHEFGHVVQHICNRAPFTKLSGMCVDPDFVELPALLLENWCYEISTLKLISGFHQDITVPIKDEACKSLQQWRYSFSALKLKQDILYC LFDQIIHSADNVDIVELFKQLHPKVMLGLPMLEGTNPASCFPRSAIGYEAACYSRIWSEVFAADIFATKFRNGNLLNHQVGIEFRNKVLSPGGSRDPIEL LTEFLGREPSIQAFIDSKLEHTF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67690			Zincin-like metalloproteases f...		Lus10036925 [exp]	0	1
AT1G67690			Zincin-like metalloproteases f...		Lus10037058 [exp]	1.0	0.8819
AT5G52950			unknown protein		Lus10027565 [exp]	2.8	0.8761
AT1G33420			RING/FYVE/PHD zinc finger supe...		Lus10039160 [exp]	6.5	0.7893
AT4G38380			MATE efflux family protein (.1...		Lus10014440 [exp]	7.5	0.8008
AT5G59790			Domain of unknown function (DU...		Lus10040860 [exp]	11.0	0.8120
AT2G06040			unknown protein		Lus10033320 [exp]	12.0	0.7770
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10009754 [exp]	12.5	0.8184
AT4G23440			Disease resistance protein (TI...		Lus10032275 [exp]	14.5	0.8103
AT1G02260			Divalent ion symporter (.1)		Lus10039251 [exp]	16.9	0.7858
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10008544 [exp]	17.9	0.7846

Compare expression of checked genes

Lus10036925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.