Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26020 700 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) AT1G13460 669 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT4G15415 640 / 0 ATB'GAMMA, ATB' GAMMA Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G21650 632 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G26030 594 / 0 ATB' DELTA, ATB'DELTA serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta (.1) AT3G09880 576 / 0 ATB' BETA, ATB'BETA Protein phosphatase 2A regulatory B subunit family protein (.1) AT5G03470 560 / 0 ATB' ALPHA, ATB'ALPHA Protein phosphatase 2A regulatory B subunit family protein (.1) AT5G25510 514 / 5e-179 Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G54930 495 / 1e-171 Protein phosphatase 2A regulatory B subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037057 [exp] 976 / 0 AT3G26020 707 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10032082 [exp] 681 / 0 AT4G15415 726 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10015144 [exp] 650 / 0 AT4G15415 753 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10030002 [exp] 643 / 0 AT4G15415 763 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10035321 [exp] 641 / 0 AT4G15415 764 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10031536 [exp] 620 / 0 AT3G26020 724 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10006440 [exp] 620 / 0 AT3G26020 651 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10011381 [exp] 613 / 0 AT3G26020 643 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10014619 [exp] 579 / 0 AT4G15415 604 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G054400 [exp] 735 / 0 AT3G26020 730 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.008G179900 [exp] 730 / 0 AT3G26020 731 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.010G054300 [exp] 711 / 0 AT3G26020 746 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.008G180000 [exp] 697 / 0 AT3G26020 711 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.017G070100 [exp] 684 / 0 AT1G13460 728 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.014G157000 [exp] 663 / 0 AT3G21650 775 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.002G226200 [exp] 647 / 0 AT4G15415 740 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.016G098400 [exp] 565 / 0 AT3G09880 743 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.006G122300 [exp] 555 / 0 AT3G09880 692 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.006G247100 [exp] 527 / 0 AT5G25510 800 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01603 [flax] [poplar] B56 Protein phosphatase 2A regulatory B subunit (B56 family)
Representative CDS sequence Show only first row Show all	>Lus10036926 pacid=23170999 polypeptide=Lus10036926 locus=Lus10036926.g ID=Lus10036926.BGIv1.0 annot-version=v1.0 ATGATTAAGCAGCTGTTAGGGAAGATTCCTAGGAAGTCGTCAAAGTCAGGTGAAAATGGCGAAACCAGAAGGAAAAGTGGGAAGAAGAAAAGCTCAAAGG CTAGTAGTAATAACAATGATTCTTCAAAGGGGAGTGGTAATGAGATCATCAACAAGTCTGGGTATGAACGGTTGAACCATCCCGGTTCAGAATCAGCTGG ACAGACCAATAATGGAAGCATCAAGATTAATGCTTTGAACCAAAATGGAAACACCAACCTCGGATTGGGTTTGTATGCCTATGAACCATTGCCTGCATTC AAGGATGTTCCGAATTCAGAGAAGCCGGCTTTGTTCCTTAAAAAGTTGAAGCTATGCAGCGTGGTGTTCGACTTCACCGATCCGGCCAACCACGTTAAGG AAAAAGAGATCAAAAGGCAGACATTGTTAGAGCTAGTGGACTATGTCACCTCCGCTAATTCGACCAAATTCAGCGAGACCGGCGTTCAAGAAGTCGTAAA GATGGTGACTTTGAACATTTTCCGGACTCCGAGCCCTCAACCGAGGGAGAACAAGGTTTTAGACGGGGTGGACTTGGAAGAAGAGGAGCCTACGATGGAT CTAGCCTGGCCGCATTTACAAATCGTGTACGAATTCTTCCTAAGGTTCGTAGCATCCTCAGAGACCGATGTTAAGTTGACCAAACGTTACATCGACCAAC GTTTCGTCCTGAAATTGTTGGAATTGGTCGACTCGGAGGATCCGAGGGAAAGGGAGTACTTGAAAACGATTCTCCACAGGATATATGGGAAGTTTATGGT GCACCGGCCGTACATAAGGAAGTCTATCAACAATGTGTTCTATCAGTTTGTGTTCGAGACCGAGAAGCATAATGGGATTGCTGAGCTTCTGGAGATCTTG GGGAGTATTATCAACGGGTTTGCGTTACCGTTGAAAGATGAGCACAAGCTGTTCCTTGTTCGGGCTTTGATTCCGTTGCATAAGCCGAGGTGCTTGGCTA TGTATCACTTGCCTTTGTCTTACTGCATTACACAGTTTGTCGAGAAAGATTGCAAGCTGGCTGATGTTGTGATCAGAGGGCTGTTGAAGTACTGGCCGGT CACTAATAGTTCGAAGGAAGTTATGTTCTTGAATGAACTTGAGGAGGTTCTCGAAGCGACTCAGCCCTCGGAATTCCAGCGATGCATGGTCCCCCTCTTC CATCAGATCGGTCGGTGTTTGAATAGTTCGCACTTTCAGGTTGCTGAAAGAGCATTGTTCCTTTGGAACAACGATCCGATCGGAAACTTGATCAAACAAA ACCGGAAGGCGATTCTGCCGATCATTCTCCCAGCGTTGGAGAAGAATACAAGCAGTCACTGGAATCAAGCTGTCCGTAGCTTGACTATAAATGTACGCAA GATCTTCGAAGATCTGGATCCCGAGCTGTTCAACGAATGCCTGGTGAAGTTCCAGGAAATTCAGAAGAAGGGAGACGAGACTAAAGCGAGACAAGAAGCT CGATGGAGACGCTTGGAAGAGATAGCAGCTGCTCAGAAAACTGCAGGTAACAACACAACAGCAGTCTGCTTTCGTTGCTTGCAATCCTTTCTAAGATCTG AGATGTCACTCAAGTTCTTGGATGGTTCTTGCTGTAAAATGCATCTAGTATAG
AA sequence Show only first row Show all	>Lus10036926 pacid=23170999 polypeptide=Lus10036926 locus=Lus10036926.g ID=Lus10036926.BGIv1.0 annot-version=v1.0 MIKQLLGKIPRKSSKSGENGETRRKSGKKKSSKASSNNNDSSKGSGNEIINKSGYERLNHPGSESAGQTNNGSIKINALNQNGNTNLGLGLYAYEPLPAF KDVPNSEKPALFLKKLKLCSVVFDFTDPANHVKEKEIKRQTLLELVDYVTSANSTKFSETGVQEVVKMVTLNIFRTPSPQPRENKVLDGVDLEEEEPTMD LAWPHLQIVYEFFLRFVASSETDVKLTKRYIDQRFVLKLLELVDSEDPREREYLKTILHRIYGKFMVHRPYIRKSINNVFYQFVFETEKHNGIAELLEIL GSIINGFALPLKDEHKLFLVRALIPLHKPRCLAMYHLPLSYCITQFVEKDCKLADVVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQPSEFQRCMVPLF HQIGRCLNSSHFQVAERALFLWNNDPIGNLIKQNRKAILPIILPALEKNTSSHWNQAVRSLTINVRKIFEDLDPELFNECLVKFQEIQKKGDETKARQEA RWRRLEEIAAAQKTAGNNTTAVCFRCLQSFLRSEMSLKFLDGSCCKMHLV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26020			Protein phosphatase 2A regulat...		Lus10036926 [exp]	0	1
AT5G05570			transducin family protein / WD...		Lus10009082 [exp]	2.0	0.8885
AT1G27980		DPL1, ATDPL1	dihydrosphingosine phosphate l...		Lus10003129 [exp]	8.3	0.8959
AT5G24870			RING/U-box superfamily protein...		Lus10026941 [exp]	9.7	0.9056
AT4G32480			Protein of unknown function (D...		Lus10017723 [exp]	11.7	0.8643
AT3G63420		AGG1, ATAGG1	Ggamma-subunit 1 (.1.2)		Lus10042727 [exp]	12.6	0.8879
AT4G31450			RING/U-box superfamily protein...		Lus10020145 [exp]	13.4	0.9018
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10032097 [exp]	14.8	0.8697
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10008658 [exp]	28.5	0.8755
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10012850 [exp]	30.0	0.8809
AT1G26670		VTI1B, ATVTI12,...	VESICAL TRANSPORT V-SNARE 12, ...		Lus10037141 [exp]	30.9	0.8737

Compare expression of checked genes

Lus10036926 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.