Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 105 / 1e-25 HXXXD-type acyl-transferase family protein (.1) AT1G24420 103 / 4e-25 HXXXD-type acyl-transferase family protein (.1) AT3G30280 91 / 1e-20 HXXXD-type acyl-transferase family protein (.1) AT1G24430 89 / 4e-20 HXXXD-type acyl-transferase family protein (.1) AT5G47950 86 / 9e-19 HXXXD-type acyl-transferase family protein (.1) AT4G15390 85 / 1e-18 HXXXD-type acyl-transferase family protein (.1) AT5G23970 82 / 2e-17 HXXXD-type acyl-transferase family protein (.1) AT5G47980 81 / 3e-17 HXXXD-type acyl-transferase family protein (.1) AT4G15400 78 / 4e-16 HXXXD-type acyl-transferase family protein (.1) AT3G50270 45 / 3e-05 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019183 [exp] 171 / 3e-50 AT3G26040 265 / 3e-84 HXXXD-type acyl-transferase family protein (.1) Lus10036819 [exp] 164 / 2e-47 AT3G26040 256 / 1e-80 HXXXD-type acyl-transferase family protein (.1) Lus10036929 [exp] 91 / 2e-20 AT3G26040 319 / 1e-102 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 84 / 3e-18 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 84 / 4e-18 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10012759 [exp] 77 / 7e-16 AT3G26040 209 / 3e-62 HXXXD-type acyl-transferase family protein (.1) Lus10028813 [exp] 74 / 1e-14 AT1G24430 218 / 3e-66 HXXXD-type acyl-transferase family protein (.1) Lus10023214 [exp] 69 / 5e-13 AT3G26040 218 / 7e-66 HXXXD-type acyl-transferase family protein (.1) Lus10017469 [exp] 68 / 9e-13 AT1G24430 224 / 3e-68 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G054100 [exp] 117 / 5e-30 AT3G26040 397 / 1e-135 HXXXD-type acyl-transferase family protein (.1) Potri.010G056300 [exp] 108 / 5e-27 AT3G26040 347 / 4e-116 HXXXD-type acyl-transferase family protein (.1) Potri.010G056400 [exp] 107 / 3e-26 AT3G26040 354 / 5e-119 HXXXD-type acyl-transferase family protein (.1) Potri.010G056450 [exp] 102 / 9e-25 AT3G26040 350 / 3e-117 HXXXD-type acyl-transferase family protein (.1) Potri.008G180400 [exp] 100 / 1e-23 AT3G26040 383 / 4e-130 HXXXD-type acyl-transferase family protein (.1) Potri.006G010300 [exp] 99 / 3e-23 AT3G26040 294 / 2e-95 HXXXD-type acyl-transferase family protein (.1) Potri.006G010200 [exp] 97 / 9e-23 AT3G26040 247 / 9e-78 HXXXD-type acyl-transferase family protein (.1) Potri.006G036100 [exp] 90 / 2e-20 AT3G26040 250 / 2e-78 HXXXD-type acyl-transferase family protein (.1) Potri.002G010700 [exp] 88 / 1e-19 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1) Potri.010G053800 [exp] 84 / 3e-18 AT1G24430 425 / 6e-147 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10036927 pacid=23171280 polypeptide=Lus10036927 locus=Lus10036927.g ID=Lus10036927.BGIv1.0 annot-version=v1.0 ATGTCAAGCATTTGTTCCTTTGTCAACTACTGGGCTACGTTGGCTTCTTTCAATTTGGCCAATCCTTTCGAGACAGATGTTGATGTGGAGTTCAACCTGG CAGATATTTACCCTCCCGTTGACCTTCCCGTACAGTACCTTTTTGACCGTCAGCAAGTCAAATGCACGAGTAAGAGATTCGTTTTCGACGGATCTGATAT CGGCAAGCTCAAATTGATCGTGAACGATAGTAAAGTTAAGAACCCTACTAGAGTGGAGGTAGTTTTAGCTCTCATCCATTCATCTCTCGTGTCTGCTTCA AGTACCACCACGACCACTTTACATAGAGAGCTATATCAAGTTGTGAATCTGAGGAGTAGAGTGGTCCCACCGTTACGAGCTGGCAACATTGGCAACATGT TTTCGACTTTCGTGACATTGATCACCGATCATGACCATGCAGAGTCGTTGGTCACAACTATTGAGGCCATTAGGGAGGCGAAAACCGCGTATTATAAGTC ATGCACTGAGAAATGTAGAGGAGATGAAGTTTGTAATTTTGTCATGGAGGTGCAAAGGTTTGGAGAAGCGGGGAGTAACGAGGCAGGGAACGTTGATGTG TTTAGTTGTAGCAGTTGGTGTGGGTTTCCGGTCTACGAACCAGATTTCGGGTGGGGGGAACCAGTTTGGGTTACTCCTACTGCTCCTGAGATGAAGGGAT TGGTTAGCATGATGGATACCAAGGATGGAGTCGGGATTGAAGCAATTGTAGAAGAAGAGGAAATGGCTGCTTTGGTGGCTAATGAAAGGCTCTTGGCTTT CTGTCACATCAATCCGAGTGTAGTTTGA
AA sequence Show only first row Show all	>Lus10036927 pacid=23171280 polypeptide=Lus10036927 locus=Lus10036927.g ID=Lus10036927.BGIv1.0 annot-version=v1.0 MSSICSFVNYWATLASFNLANPFETDVDVEFNLADIYPPVDLPVQYLFDRQQVKCTSKRFVFDGSDIGKLKLIVNDSKVKNPTRVEVVLALIHSSLVSAS STTTTTLHRELYQVVNLRSRVVPPLRAGNIGNMFSTFVTLITDHDHAESLVTTIEAIREAKTAYYKSCTEKCRGDEVCNFVMEVQRFGEAGSNEAGNVDV FSCSSWCGFPVYEPDFGWGEPVWVTPTAPEMKGLVSMMDTKDGVGIEAIVEEEEMAALVANERLLAFCHINPSVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036927 [exp]	0	1
AT1G02335		GL22	germin-like protein subfamily ...		Lus10023350 [exp]	1.4	0.9999
AT5G36000			unknown protein		Lus10004013 [exp]	1.7	0.9966
AT5G44940			F-box/RNI-like superfamily pro...		Lus10000726 [exp]	2.0	0.9998
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Lus10000747 [exp]	2.2	0.9922
					Lus10000586 [exp]	2.8	0.9831
AT4G28365		AtENODL3	early nodulin-like protein 3 (...		Lus10039852 [exp]	3.5	0.9925
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10042576 [exp]	4.7	0.9747
AT3G54200			Late embryogenesis abundant (L...		Lus10007649 [exp]	6.0	0.9819
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10007352 [exp]	6.3	0.9813
AT5G61850	LFY	LFY3, LFY	LEAFY 3, floral meristem ident...		Lus10016732 [exp]	6.9	0.9852

Compare expression of checked genes

Lus10036927 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.