Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 106 / 8e-28 HXXXD-type acyl-transferase family protein (.1) AT3G30280 103 / 8e-27 HXXXD-type acyl-transferase family protein (.1) AT4G15390 97 / 1e-24 HXXXD-type acyl-transferase family protein (.1) AT5G47950 91 / 2e-22 HXXXD-type acyl-transferase family protein (.1) AT5G23970 89 / 2e-21 HXXXD-type acyl-transferase family protein (.1) AT1G24430 87 / 9e-21 HXXXD-type acyl-transferase family protein (.1) AT1G24420 79 / 7e-18 HXXXD-type acyl-transferase family protein (.1) AT4G15400 74 / 3e-16 HXXXD-type acyl-transferase family protein (.1) AT5G47980 74 / 4e-16 HXXXD-type acyl-transferase family protein (.1) AT5G57840 58 / 9e-11 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036819 [exp] 168 / 4e-51 AT3G26040 256 / 1e-80 HXXXD-type acyl-transferase family protein (.1) Lus10019183 [exp] 161 / 1e-48 AT3G26040 265 / 3e-84 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 103 / 7e-27 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 102 / 2e-26 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10025730 [exp] 93 / 9e-24 AT4G15390 123 / 2e-32 HXXXD-type acyl-transferase family protein (.1) Lus10017925 [exp] 87 / 1e-20 AT3G26040 264 / 1e-83 HXXXD-type acyl-transferase family protein (.1) Lus10035932 [exp] 86 / 3e-20 AT1G24430 224 / 3e-68 HXXXD-type acyl-transferase family protein (.1) Lus10040354 [exp] 85 / 6e-20 AT3G26040 224 / 1e-67 HXXXD-type acyl-transferase family protein (.1) Lus10039330 [exp] 84 / 1e-19 AT3G26040 240 / 2e-74 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G010300 [exp] 112 / 2e-30 AT3G26040 294 / 2e-95 HXXXD-type acyl-transferase family protein (.1) Potri.010G053800 [exp] 108 / 1e-28 AT1G24430 425 / 6e-147 HXXXD-type acyl-transferase family protein (.1) Potri.010G056450 [exp] 107 / 3e-28 AT3G26040 350 / 3e-117 HXXXD-type acyl-transferase family protein (.1) Potri.010G056400 [exp] 107 / 4e-28 AT3G26040 354 / 5e-119 HXXXD-type acyl-transferase family protein (.1) Potri.010G054002 [exp] 106 / 6e-28 AT1G24430 426 / 3e-147 HXXXD-type acyl-transferase family protein (.1) Potri.010G056300 [exp] 100 / 6e-26 AT3G26040 347 / 4e-116 HXXXD-type acyl-transferase family protein (.1) Potri.007G139400 [exp] 99 / 2e-25 AT3G26040 252 / 7e-80 HXXXD-type acyl-transferase family protein (.1) Potri.008G180400 [exp] 96 / 5e-24 AT3G26040 383 / 4e-130 HXXXD-type acyl-transferase family protein (.1) Potri.002G010700 [exp] 92 / 7e-23 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1) Potri.017G010600 [exp] 90 / 7e-22 AT3G26040 265 / 3e-84 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10036928 pacid=23171236 polypeptide=Lus10036928 locus=Lus10036928.g ID=Lus10036928.BGIv1.0 annot-version=v1.0 ATGAACAATGCAAGAAAACCTGAGGTTTACTCGAGAGAGATGATCAAACCATCTTCCCAAACCCCAACCCACCTCAAAACCCACAAACTGTCCCTATTCG ACCAATTGGCTCCTCCGATTTACGTCCCTGTCCTCTTCTTCTACCCGCGTCAAGAACCAGTGCGCCCCAATAACACGATCCTGAAAACTTCCCTGCCTTC GGCGCTAACCAAGTACTACCCTTTAGCCGGAGCAATAAGGGATGATTATGTTGACTGCAACGACGAAGGAGTCGCTTTCCTCCAAGCGCGAACTGACTCG AAACTGGTCGACGTACTTGAGATTCCAGATGATCAGACCCTAAAGCTCCTCTTCCCGGATGCTCTTTGTTACAAGATACAAAACAGAGCAGCCCCTTGA
AA sequence Show only first row Show all	>Lus10036928 pacid=23171236 polypeptide=Lus10036928 locus=Lus10036928.g ID=Lus10036928.BGIv1.0 annot-version=v1.0 MNNARKPEVYSREMIKPSSQTPTHLKTHKLSLFDQLAPPIYVPVLFFYPRQEPVRPNNTILKTSLPSALTKYYPLAGAIRDDYVDCNDEGVAFLQARTDS KLVDVLEIPDDQTLKLLFPDALCYKIQNRAAP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G30280			HXXXD-type acyl-transferase fa...		Lus10036928 [exp]	0	1
					Lus10027558 [exp]	1.4	0.8599
AT3G05950			RmlC-like cupins superfamily p...		Lus10026962 [exp]	2.8	0.7987
AT4G31880			unknown protein		Lus10026078 [exp]	12.2	0.8426
AT2G32940		AGO6	ARGONAUTE 6, Argonaute family ...		Lus10015155 [exp]	17.7	0.8040
AT2G36780			UDP-Glycosyltransferase superf...		Lus10014403 [exp]	23.3	0.7177
AT5G20240	MADS	PI, PISTILLATA	PISTILLATA, K-box region and M...		Lus10029719 [exp]	23.6	0.7969
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10034370 [exp]	26.2	0.7947
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000558 [exp]	28.1	0.7938
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10022473 [exp]	30.1	0.7938
AT4G10950			SGNH hydrolase-type esterase s...		Lus10023070 [exp]	31.9	0.7938

Compare expression of checked genes

Lus10036928 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.